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GEO accession:
Sample GSM94378
Query DataSets for GSM94378
Status
Public on Jul 01, 2006
Title
PBMCs from an HIV positive transmitter mother in Botswana (11)
Sample type
RNA
Source name
Human peripheral blood mononuclear cells (PBMCs) from an HIV positive Batswana woman
Organism
Homo sapiens
Characteristics
Botswana mother between 17 and 44 years old. HIV positive. Transmitted virus to child.
Extracted molecule
total RNA
Label
Biotin
Description
HIV seropositive and drug naive
HIV seropositive transmitter mothers
Data processing
Data scaled with GCOS
Submission date
Jan 30, 2006
Last update date
Sep 13, 2006
Contact name
Monty Montano
E-mail(s)
mmontano@bu.edu
Phone
617 414-4806
Fax
617 414-3561
URL
http://www.bmc.org/HIV-AIDS/MontyMontano.htm
Organization name
Boston Medical Center
Department
Medicine
Lab
Center for HIV-1/AIDS Care and Research
Street address
650 Albany Street, Bldg X, room 640
City
Boston
State/province
MA
ZIP/Postal code
02118
Country
USA
Platform ID
GPL571
Series (1)
GSE4124
Gene-expression profiling of HIV-1 infection and perinatal transmission in Botswana
Data table header descriptions
ID_REF
VALUE
GCOS scaled intensity values
DETECTION_P-VALUE
Quality of measurement
ABS_CALL
Present, absent or marginal call
SCALED_VALUE
Scaled intensity values
Data table
ID_REF
VALUE
DETECTION_P-VALUE
ABS_CALL
SCALED_VALUE
1007_s_at
5.7
0.541184
A
108.8928
1053_at
3.8
0.175949
A
72.5952
117_at
34.4
0.007543
P
657.1776
121_at
33.6
0.031336
P
641.8944
1255_g_at
0.4
0.88284
A
7.6416
1294_at
69.5
0.009985
P
1327.728
1316_at
5.3
0.204022
A
101.2512
1320_at
0.9
0.901946
A
17.1936
1405_i_at
1860.9
0.000491
P
35550.6336
1431_at
3.7
0.089369
A
70.6848
1438_at
3.1
0.189687
A
59.2224
1487_at
24
0.11716
A
458.496
1494_f_at
10.9
0.127645
A
208.2336
1598_g_at
23.6
0.098054
A
450.8544
160020_at
18.7
0.060419
M
357.2448
1729_at
23.5
0.066865
A
448.944
177_at
4.1
0.302547
A
78.3264
1773_at
1.1
0.561639
A
21.0144
179_at
15.1
0.5
A
288.4704
1861_at
1.1
0.732537
A
21.0144
Total number of rows:
22277
Table truncated, full table size
750 Kbytes
.
Supplementary data files not provided
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