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Sample GSM948574 Query DataSets for GSM948574
Status Public on Nov 09, 2012
Title b38-
Sample type RNA
 
Source name Human colon biopsies from UC patient with active disease (non-involved mucosa)
Organism Homo sapiens
Characteristics gender: male
age (years): 34
evolution time (years): 7
disease extension: Left-sided colitis
treatment: Azathioprine
Extracted molecule total RNA
Extraction protocol Total RNA was extracted by Rneasy Kit (Qiagen) according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol using a Gene chip scanner 3000
Description Gene expression data from human colon biopsies; non-involved area UC active patient
Data processing The data were analyzed with Bioconductor tools in R (http://www.r-project.org) using GC-RMA as normalization method. Next we employ a conservative probe-filtering step excluding those probe sets not reaching a log2 expression values of 5 in at least 1 sample.
 
Submission date Jun 14, 2012
Last update date Nov 10, 2012
Contact name Azucena Salas
E-mail(s) asalas1@recerca.clinic.cat
Organization name IDIBAPS
Department Gastroenterology
Street address Rosselló, 149-153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL570
Series (1)
GSE38713 Expression data from intestinal mucosa of patients with UC

Data table header descriptions
ID_REF
VALUE log2 GC-RMA expression value

Data table
ID_REF VALUE
1007_s_at 9.384636114
1053_at 7.433385328
117_at 2.699328271
121_at 4.100607197
1255_g_at 2.283377571
1294_at 5.339629907
1316_at 3.008534083
1320_at 2.944055555
1405_i_at 7.743516655
1431_at 2.653019134
1438_at 5.775758144
1487_at 8.909033404
1494_f_at 2.302637967
1552256_a_at 6.268899245
1552257_a_at 9.35910954
1552258_at 2.370845035
1552261_at 2.632821234
1552263_at 6.381957613
1552264_a_at 8.264242116
1552266_at 2.716089903

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM948574_38-.cel.gz 7.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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