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Sample GSM99480

Query DataSets for GSM99480

Status

Public on Mar 08, 2006

Title

brain, Right Temporal Lobe: Extract82_le1

Sample type

RNA

Source name

brain, Right Temporal Lobe

Organism

Homo sapiens

Characteristics

tissue: brain, Right Temporal Lobe
histology: GBM
tumor number (as appears in figure 3): 839
age: 82
gender: MALE
grade: 4
living: DECEASED
survival time: 286
survival cluster: SC1
hc_74_samples: HC1B
hc_85_samples: HC1B
array: 133A

Extracted molecule

total RNA

Extraction protocol

RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).

Label protocol

Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).

Hybridization protocol

Standard Affymetrix protocols were used.

Scan protocol

Standard Affymetrix protocols were used.

Description

GBM
Treatment, type=remove

Submission date

Mar 08, 2006

Last update date

Sep 11, 2014

Contact name

Winnie Liang

E-mail(s)

wliang@tgen.org

Organization name

Translational Genomics

Street address

445 N. Fifth Street

City

Phoenix

State/province

ZIP/Postal code

85012

Country

USA

Platform ID

GPL96

Series (1)

GSE4412

freij-affy-human-91666

Relations

Reanalyzed by

GSM326675

Reanalyzed by

GSE61335

Data table header descriptions
ID_REF	The name of the probe set, blank for control probes
VALUE	The signal value calculated by MAS 5 or GCOS software.
ABS_CALL	The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE	The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	1982.4585	P	0.002867
AFFX-BioB-M_at	2992.9268	P	0.000581
AFFX-BioB-3_at	1442.0376	P	0.000662
AFFX-BioC-5_at	5204.682	P	0.000169
AFFX-BioC-3_at	4236.963	P	0.000070
AFFX-BioDn-5_at	3807.2034	P	0.000095
AFFX-BioDn-3_at	23627.275	P	0.000127
AFFX-CreX-5_at	35032.836	P	0.000044
AFFX-CreX-3_at	54178.8	P	0.000044
AFFX-DapX-5_at	102.541084	A	0.275146
AFFX-DapX-M_at	189.3407	A	0.165861
AFFX-DapX-3_at	12.251801	A	0.988616
AFFX-LysX-5_at	103.035545	A	0.440646
AFFX-LysX-M_at	304.42917	A	0.195266
AFFX-LysX-3_at	126.05208	A	0.340661
AFFX-PheX-5_at	7.071867	A	0.957038
AFFX-PheX-M_at	19.454926	A	0.921998
AFFX-PheX-3_at	244.84972	A	0.603080
AFFX-ThrX-5_at	152.59174	A	0.440646
AFFX-ThrX-M_at	36.00341	A	0.631562

Total number of rows: 22283

Table truncated, full table size 687 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM99480.CEL.gz	3.5 Mb	(ftp)(http)	CEL