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Status
Public on Mar 08, 2006
Title
brain, Right Temporal Parietal: Extract84_le2
Sample type
RNA
Source name
brain, Right Temporal Parietal
Organism
Homo sapiens Characteristics
tissue: brain, Right Temporal Parietal
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
3643.7864
P
0.002275
AFFX-BioB-M_at
7570.7876
P
0.000581
AFFX-BioB-3_at
3370.7537
P
0.006187
AFFX-BioC-5_at
10693.226
P
0.000258
AFFX-BioC-3_at
9552.3955
P
0.000081
AFFX-BioDn-5_at
7417.4775
P
0.000095
AFFX-BioDn-3_at
56039.324
P
0.000127
AFFX-CreX-5_at
94859.62
P
0.000044
AFFX-CreX-3_at
160671.72
P
0.000044
AFFX-DapX-5_at
415.00626
A
0.313723
AFFX-DapX-M_at
409.41867
A
0.588620
AFFX-DapX-3_at
141.88802
A
0.927300
AFFX-LysX-5_at
392.03326
A
0.455413
AFFX-LysX-M_at
190.52046
A
0.645547
AFFX-LysX-3_at
192.55432
A
0.588620
AFFX-PheX-5_at
22.561533
A
0.953518
AFFX-PheX-M_at
120.78115
A
0.783476
AFFX-PheX-3_at
179.03328
A
0.783476
AFFX-ThrX-5_at
171.33676
A
0.737173
AFFX-ThrX-M_at
181.09157
A
0.645547
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99485.CEL.gz
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(ftp) (http) CEL
