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Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract9_le1
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
AA
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
2375.8147
P
0.001410
AFFX-BioB-M_at
4439.872
P
0.000581
AFFX-BioB-3_at
2047.6277
P
0.002023
AFFX-BioC-5_at
5588.523
P
0.000390
AFFX-BioC-3_at
5019.4927
P
0.000070
AFFX-BioDn-5_at
4076.398
P
0.000127
AFFX-BioDn-3_at
32798.26
P
0.000127
AFFX-CreX-5_at
49879.414
P
0.000044
AFFX-CreX-3_at
71689.55
P
0.000044
AFFX-DapX-5_at
283.30804
A
0.116113
AFFX-DapX-M_at
104.4342
A
0.500000
AFFX-DapX-3_at
47.368828
A
0.860518
AFFX-LysX-5_at
61.641373
A
0.588620
AFFX-LysX-M_at
51.03078
A
0.724854
AFFX-LysX-3_at
76.33151
A
0.382599
AFFX-PheX-5_at
38.182697
A
0.772364
AFFX-PheX-M_at
42.76389
A
0.804734
AFFX-PheX-3_at
133.70891
A
0.659339
AFFX-ThrX-5_at
58.044518
A
0.783476
AFFX-ThrX-M_at
54.871986
A
0.588620
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99506.CEL.gz
3.4 Mb
(ftp) (http) CEL
