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Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract11_le2
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
AO
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
4084.0154
P
0.001796
AFFX-BioB-M_at
7806.454
P
0.000390
AFFX-BioB-3_at
3340.7542
P
0.004017
AFFX-BioC-5_at
13092.43
P
0.000169
AFFX-BioC-3_at
10984.004
P
0.000095
AFFX-BioDn-5_at
8781.76
P
0.000070
AFFX-BioDn-3_at
52347.777
P
0.000340
AFFX-CreX-5_at
107388.85
P
0.000044
AFFX-CreX-3_at
161759.92
P
0.000044
AFFX-DapX-5_at
441.61087
A
0.175328
AFFX-DapX-M_at
655.0323
P
0.039661
AFFX-DapX-3_at
161.66473
A
0.783476
AFFX-LysX-5_at
78.503265
A
0.603080
AFFX-LysX-M_at
390.43002
A
0.588620
AFFX-LysX-3_at
83.54894
A
0.645547
AFFX-PheX-5_at
44.125664
A
0.960339
AFFX-PheX-M_at
67.88535
A
0.957038
AFFX-PheX-3_at
230.76915
A
0.897835
AFFX-ThrX-5_at
173.32298
A
0.749204
AFFX-ThrX-M_at
116.10874
A
0.760937
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99511.CEL.gz
3.3 Mb
(ftp) (http) CEL
