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Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract20_le1
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1552.9126
P
0.004998
AFFX-BioB-M_at
4575.9673
P
0.001248
AFFX-BioB-3_at
1224.8821
P
0.023929
AFFX-BioC-5_at
5568.1235
P
0.000169
AFFX-BioC-3_at
4167.9316
P
0.000081
AFFX-BioDn-5_at
4102.4067
P
0.000127
AFFX-BioDn-3_at
32514.889
P
0.000127
AFFX-CreX-5_at
47244.95
P
0.000044
AFFX-CreX-3_at
73434.03
P
0.000044
AFFX-DapX-5_at
142.33537
A
0.250796
AFFX-DapX-M_at
204.16579
A
0.382599
AFFX-DapX-3_at
29.985603
A
0.953518
AFFX-LysX-5_at
29.505335
A
0.672921
AFFX-LysX-M_at
233.57202
A
0.440646
AFFX-LysX-3_at
42.544216
A
0.500000
AFFX-PheX-5_at
21.86601
A
0.953518
AFFX-PheX-M_at
16.10706
A
0.988616
AFFX-PheX-3_at
122.33857
A
0.603080
AFFX-ThrX-5_at
64.98802
A
0.699394
AFFX-ThrX-M_at
15.861817
A
0.891021
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99528.CEL.gz
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