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Status
Public on Mar 08, 2006
Title
brain, left frontal temporal lobe: Extract36_le1
Sample type
RNA
Source name
brain, left frontal temporal lobe
Organism
Homo sapiens Characteristics
tissue: brain, left frontal temporal lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Relations Reanalyzed by
GSM326692 Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1774.7389
P
0.001593
AFFX-BioB-M_at
4017.709
P
0.000225
AFFX-BioB-3_at
1574.751
P
0.003212
AFFX-BioC-5_at
6336.337
P
0.000195
AFFX-BioC-3_at
4617.848
P
0.000070
AFFX-BioDn-5_at
5811.5957
P
0.000070
AFFX-BioDn-3_at
34080.832
P
0.000095
AFFX-CreX-5_at
53948.97
P
0.000044
AFFX-CreX-3_at
84020.82
P
0.000044
AFFX-DapX-5_at
65.27379
A
0.588620
AFFX-DapX-M_at
112.680214
A
0.529760
AFFX-DapX-3_at
36.649944
A
0.963431
AFFX-LysX-5_at
151.39174
A
0.529760
AFFX-LysX-M_at
82.91065
A
0.514890
AFFX-LysX-3_at
249.5073
A
0.354453
AFFX-PheX-5_at
18.258053
A
0.963431
AFFX-PheX-M_at
33.597687
A
0.932322
AFFX-PheX-3_at
180.05873
A
0.672921
AFFX-ThrX-5_at
32.50415
A
0.916408
AFFX-ThrX-M_at
96.233574
A
0.617401
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99560.CEL.gz
3.4 Mb
(ftp) (http) CEL
