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Sample GSM9957 Query DataSets for GSM9957
Status Public on Dec 10, 2003
Title CBA1Cy5vsBL101Cy3
Sample type RNA
 
Channel 1
Source name CBA1
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name BL101
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Hybridization for gene expression variation between mouse inbred strains
 
Submission date Sep 11, 2003
Last update date May 28, 2005
Contact name Rolf Turk
E-mail(s) rturk@lumc.nl
Phone +31 71 527 6611
Organization name Leiden University Medical Center
Department Center for Human and Clinical Genetics
Lab den Dunnen
Street address Wassenaarseweg 72
City Leiden
ZIP/Postal code 2333AL
Country Netherlands
 
Platform ID GPL485
Series (1)
GSE662 Mouse Inbred Strain Variation Muscle

Data table header descriptions
ID_REF
VALUE normalized log ratio
X coordinate
Y coordinate
Dia. diameter
F1 Median Cy5 foreground median
F1 Mean Cy5 foreground mean
F1 SD Cy5 foreground sd
B1 Median Cy5 background median
B1 Mean Cy5 background mean
B1 SD Cy5 background sd
% > B1+1SD percentage F1 pixels higher than B1+1SD
% > B1+2SD percentage F1 pixels higher than B1+2SD
F1 % Sat. percentage saturated spots
F2 Median Cy3 foreground median
F2 Mean Cy3 foreground mean
F2 SD Cy3 foreground sd
B2 Median Cy3 background median
B2 Mean Cy3 backgound mean
B2 SD Cy3 background sd
% > B2+1SD percentage F2 pixels higher than B2+1SD
% > B2+2SD percentage F2 pixels higher than B2+2SD
F2 % Sat. percentage saturated spots
Ratio of Medians ratio of medians
Ratio of Means ratio of means
Median of Ratios median of ratios
Mean of Ratios mean of ratios
Ratios SD ratois sd
Rgn Ratio regression ratio
Rgn R2 regression R square
F Pixels foreground pixels
B Pixels background pixels
Sum of Medians sum of medians
Sum of Means sum of means
Log Ratio log ratio
F1 Median - B1 F1 median - B1
F2 Median - B2 F2 median - B2
F1 Mean - B1 F1 mean - B1
F2 Mean - B2 F2 mean - B2
Flags flags

Data table
ID_REF VALUE X Y Dia. F1 Median F1 Mean F1 SD B1 Median B1 Mean B1 SD % > B1+1SD % > B1+2SD F1 % Sat. F2 Median F2 Mean F2 SD B2 Median B2 Mean B2 SD % > B2+1SD % > B2+2SD F2 % Sat. Ratio of Medians Ratio of Means Median of Ratios Mean of Ratios Ratios SD Rgn Ratio Rgn R2 F Pixels B Pixels Sum of Medians Sum of Means Log Ratio F1 Median - B1 F2 Median - B2 F1 Mean - B1 F2 Mean - B2 Flags
LGTCmuOLIs1_1 0.432244052 2770 4210 170 856 862 77 834 850 119 11 0 0 680 687 62 672 684 92 7 2 0 2.75 1.867 1.64 1.651 3.382 1.562 0.332 208 1318 30 43 1.459 22 8 28 15 -75
LGTCmuOLIs1_2 0.854537655 3010 4210 170 1170 1506 2010 1009 1014 128 55 29 0 763 766 98 748 758 103 13 1 0 10.733 27.611 2.723 2.54 3.384 36.119 0.084 208 1185 176 515 3.424 161 15 497 18 -50
LGTCmuOLIs1_3 0.275506132 3250 4230 170 6794 6821 790 1088 1089 116 100 100 0 3404 3398 343 783 793 98 100 100 0 2.177 2.192 2.198 2.192 1.091 2.211 0.963 208 1124 8327 8348 1.122 5706 2621 5733 2615 0
LGTCmuOLIs1_4 -0.105725608 3460 4220 130 1626 1622 196 1111 1129 144 97 90 0 1233 1232 134 824 848 117 97 89 0 1.259 1.252 1.262 1.255 1.319 1.338 0.718 120 757 924 919 0.332 515 409 511 408 0
LGTCmuOLIs1_5 0.023176039 3730 4240 170 2016 2070 272 1049 1060 133 100 100 0 1411 1450 156 789 806 114 100 100 0 1.555 1.545 1.536 1.534 1.168 1.615 0.876 208 1210 1589 1682 0.637 967 622 1021 661 0
LGTCmuOLIs1_6 -0.368038742 3970 4240 170 2212 2231 182 1028 1035 104 100 100 0 1858 1868 122 765 777 96 100 100 0 1.083 1.091 1.077 1.085 1.133 1.105 0.932 208 1135 2277 2306 0.115 1184 1093 1203 1103 0
LGTCmuOLIs1_7 -0.135090943 4220 4240 170 2025 2037 173 1104 1124 149 100 100 0 1488 1475 149 794 809 108 100 99 0 1.327 1.37 1.35 1.385 1.251 1.392 0.891 208 1164 1615 1614 0.408 921 694 933 681 0
LGTCmuOLIs1_8 -0.206180219 4460 4250 170 2604 2611 203 1308 1365 261 100 100 0 1925 1929 154 910 934 165 100 100 0 1.277 1.279 1.271 1.278 1.143 1.295 0.914 208 1107 2311 2322 0.353 1296 1015 1303 1019 0
LGTCmuOLIs1_9 -0.189165741 4690 4240 170 1880 1962 359 1639 1689 365 37 15 0 1310 1354 227 1057 1098 230 53 21 0 0.953 1.088 1.143 1.058 2.435 1.569 0.683 208 1218 494 620 -0.07 241 253 323 297 -50
LGTCmuOLIs1_10 0.13663864 4940 4250 170 5100 5091 515 1716 1712 276 100 100 0 2878 2836 323 1071 1082 172 100 100 0 1.873 1.912 1.887 1.925 1.147 1.876 0.94 208 1130 5191 5140 0.905 3384 1807 3375 1765 0
LGTCmuOLIs1_11 -0.340947735 5170 4250 170 1878 1890 363 1698 1702 217 46 23 0 1320 1354 219 1071 1085 141 71 43 0 0.723 0.678 1.009 0.97 2.477 1.451 0.559 208 1116 429 475 -0.468 180 249 192 283 -50
LGTCmuOLIs1_12 -0.377924877 5410 4260 170 3183 3289 556 1732 1768 303 100 98 0 2436 2530 406 1103 1125 169 100 100 0 1.089 1.091 1.083 1.066 1.207 1.161 0.9 208 1123 2784 2984 0.122 1451 1333 1557 1427 0
LGTCmuOLIs1_13 -0.215795632 5650 4260 170 2327 2327 302 1596 1654 661 56 3 0 1670 1683 200 1058 1076 239 98 75 0 1.194 1.17 1.157 1.101 1.533 1.318 0.816 208 1146 1343 1356 0.256 731 612 731 625 -50
LGTCmuOLIs1_14 -0.020325236 5890 4270 170 2740 2769 350 1544 1580 639 97 42 0 1830 1856 228 1043 1058 286 99 86 0 1.52 1.507 1.502 1.504 1.211 1.486 0.805 208 1151 1983 2038 0.604 1196 787 1225 813 0
LGTCmuOLIs1_15 -0.24153947 6130 4270 170 2564 2583 275 1530 1553 211 100 100 0 1894 1887 162 1040 1052 162 100 100 0 1.211 1.243 1.237 1.223 1.191 1.317 0.887 208 1114 1888 1900 0.276 1034 854 1053 847 0
LGTCmuOLIs1_16 -0.190975945 6380 4280 180 2536 2518 212 1512 1530 180 100 99 0 1838 1821 178 1032 1050 152 98 97 0 1.27 1.275 1.272 1.294 1.357 1.297 0.865 256 1252 1830 1795 0.345 1024 806 1006 789 0
LGTCmuOLIs1_17 -0.157735987 6620 4280 180 2839 2823 322 1542 1555 189 100 98 0 2037 2032 301 1068 1089 163 97 95 0 1.338 1.329 1.305 1.376 1.375 1.328 0.904 256 1215 2266 2245 0.421 1297 969 1281 964 0
LGTCmuOLIs1_18 -0.193167797 6860 4290 180 2615 2613 318 1648 1662 194 100 96 0 1893 1915 217 1126 1152 167 100 99 0 1.261 1.223 1.197 1.196 1.304 1.296 0.848 256 1443 1734 1754 0.334 967 767 965 789 0
LGTCmuOLIs1_19 -0.131066969 2770 4450 170 1846 1841 154 857 877 131 100 100 0 1408 1412 105 671 689 102 100 100 0 1.342 1.328 1.342 1.323 1.154 1.345 0.903 208 1190 1726 1725 0.424 989 737 984 741 0
LGTCmuOLIs1_20 -0.030023949 3020 4470 170 1624 1622 229 1000 998 130 99 95 0 1179 1194 126 733 744 108 100 99 0 1.399 1.349 1.366 1.296 1.325 1.406 0.793 208 960 1070 1083 0.485 624 446 622 461 0

Total number of rows: 15552

Table truncated, full table size 2914 Kbytes.




Supplementary data files not provided
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