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Status
Public on Mar 08, 2006
Title
brain, Right Cerebellum: Extract53_le1
Sample type
RNA
Source name
brain, Right Cerebellum
Organism
Homo sapiens Characteristics
tissue: brain, Right Cerebellum
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
2580.38
P
0.004017
AFFX-BioB-M_at
4335.215
P
0.000195
AFFX-BioB-3_at
1506.6514
P
0.000662
AFFX-BioC-5_at
5547.773
P
0.000127
AFFX-BioC-3_at
4416.267
P
0.000070
AFFX-BioDn-5_at
4140.5166
P
0.000052
AFFX-BioDn-3_at
31784.887
P
0.000095
AFFX-CreX-5_at
46043.1
P
0.000044
AFFX-CreX-3_at
77343.49
P
0.000044
AFFX-DapX-5_at
47.588326
A
0.686277
AFFX-DapX-M_at
227.45255
A
0.156732
AFFX-DapX-3_at
25.37941
A
0.971543
AFFX-LysX-5_at
173.29321
A
0.354453
AFFX-LysX-M_at
178.59181
A
0.737173
AFFX-LysX-3_at
24.85629
A
0.760937
AFFX-PheX-5_at
17.144024
A
0.937071
AFFX-PheX-M_at
29.31478
A
0.904333
AFFX-PheX-3_at
171.30286
A
0.544587
AFFX-ThrX-5_at
39.120438
A
0.860518
AFFX-ThrX-M_at
64.008194
A
0.574038
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99592.CEL.gz
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