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Status
Public on Mar 08, 2006
Title
brain, Right Frontal Lobe: Extract54_le1
Sample type
RNA
Source name
brain, Right Frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Right Frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1999.1292
P
0.013811
AFFX-BioB-M_at
3804.0046
P
0.002867
AFFX-BioB-3_at
1439.9491
P
0.018281
AFFX-BioC-5_at
5585.3647
P
0.000972
AFFX-BioC-3_at
4141.137
P
0.000297
AFFX-BioDn-5_at
3867.7637
P
0.000754
AFFX-BioDn-3_at
30671.111
P
0.000297
AFFX-CreX-5_at
43694.594
P
0.000044
AFFX-CreX-3_at
63912.28
P
0.000044
AFFX-DapX-5_at
43.937073
A
0.440646
AFFX-DapX-M_at
462.4367
A
0.205732
AFFX-DapX-3_at
39.836296
A
0.891021
AFFX-LysX-5_at
368.3097
A
0.116113
AFFX-LysX-M_at
500.75055
A
0.396920
AFFX-LysX-3_at
52.904648
A
0.737173
AFFX-PheX-5_at
87.04427
A
0.737173
AFFX-PheX-M_at
37.21598
A
0.957038
AFFX-PheX-3_at
137.05515
A
0.794268
AFFX-ThrX-5_at
114.29066
A
0.749204
AFFX-ThrX-M_at
95.37141
A
0.588620
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99594.CEL.gz
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(ftp) (http) CEL
