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Sample GSM997 Query DataSets for GSM997
Status Public on Feb 12, 2002
Title YP fructose vs reference pool
Sample type RNA
 
Channel 1
Source name pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name fructose
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12n114
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL52
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 22 21 1 20 2 19 18 22 2 24 .076 0 1 .692 18 17 .5 .5 2 2 .055 1119 177 69 84 54 69 1
2 23 19 9 27 10 22 17 21 12 33 .749 0 .415 1.136 40 36 .9 .75 1.111 1.333 .864 928 177 68 83 71 86 .415
3 22 17 2 16 1 21 15 18 2 20 .585 0 0 .875 19 19 2 1 .5 1 .446 918 177 68 83 89 104 0
4 17 15 9 21 8 15 13 16 10 26 .585 0 .152 1 44 44 1.125 .9 .889 1.111 .564 906 177 68 83 106 121 .152
5 16 14 26 37 24 15 13 16 29 45 .641 0 .158 .947 73 74 1.083 .897 .923 1.115 .649 919 177 68 83 124 139 .158
6 20 15 8 22 8 21 14 17 10 27 .686 0 .322 1.158 40 35 1 .8 1 1.25 .701 928 177 67 82 142 157 .322
7 23 15 1 13 25 15 18 16 .214 0 .895 20 10 .18 919 177 67 82 159 174
8 21 14 13 24 15 18 16 .082 0 1 14 6 .07 928 177 67 82 177 192
9 17 12 1 13 1 19 12 15 1 16 .131 0 0 .8 20 24 1 1 1 1 .134 896 177 67 82 195 210 0
10 27 11 11 31 11 13 13 .08 0 .75 24 18 .068 928 177 66 81 212 227
11 31 11 1 11 33 11 13 13 -.009 0 .889 22 16 -.007 918 177 66 81 230 245
12 28 13 1 13 1 31 12 15 1 16 -.024 0 0 .6 25 17 1 1 1 1 -.018 906 177 66 81 247 262 0
13 47 13 2 13 78 13 16 16 .096 0 .7 27 15 .078 919 177 66 81 265 280
14 33 13 12 57 13 16 15 .077 0 .889 16 10 .061 928 177 65 80 283 298
15 33 12 11 36 12 15 13 -.058 0 .9 19 14 -.057 919 177 65 80 300 315
16 35 13 13 1 37 12 15 1 16 -.082 0 .857 20 22 -.076 928 177 65 80 318 333
17 21 14 13 1 21 12 15 1 16 .038 0 .875 15 20 .031 896 177 65 80 336 351
18 19 13 11 18 12 15 13 .211 0 .875 11 10 .171 928 177 64 79 353 368
19 18 11 10 17 11 13 12 .008 0 .4 22 11 .006 928 177 64 79 371 386
20 21 11 10 22 11 13 12 -.018 0 1 20 11 -.015 919 177 64 79 388 403

Total number of rows: 9216

Table truncated, full table size 1003 Kbytes.




Supplementary data files not provided
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