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    LOC4325064 F-box/LRR-repeat protein At1g67190 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325064, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4325064
    Gene description
    F-box/LRR-repeat protein At1g67190
    Locus tag
    OSNPB_010859600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0679C12.5
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 19.8), roots after flowering (RPKM 19.5) and 6 other tissues See more
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    Genomic context

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    See LOC4325064 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37190441..37197799, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YnbD Neighboring gene transcription factor LG2-like Neighboring gene 60S ribosomal protein L10a Neighboring gene acidic endochitinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box/LRR-repeat protein At1g67190
    Names
    F-box protein-like
    Os01g0859600
    P0489B03.15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      37190441..37197799 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766007.2 → XP_015621493.1  F-box/LRR-repeat protein At1g67190

      UniProtKB/TrEMBL
      A0A8J8XZS9, A2WX70, A2ZZS3, Q0JHJ5, Q8RZ32
      Conserved Domains (2) summary
      smart00256
      Location:4 → 39
      FBOX; A Receptor for Ubiquitination Targets
      sd00033
      Location:126 → 148
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_015766005.2 → XP_015621491.1  F-box/LRR-repeat protein At1g67190

      UniProtKB/TrEMBL
      A0A8J8XZS9, A2WX70, A2ZZS3, Q0JHJ5, Q8RZ32
      Conserved Domains (2) summary
      smart00256
      Location:4 → 39
      FBOX; A Receptor for Ubiquitination Targets
      sd00033
      Location:126 → 148
      LRR_RI; leucine-rich repeat [structural motif]

    3. XM_015766006.2 → XP_015621492.1  F-box/LRR-repeat protein At1g67190

      UniProtKB/TrEMBL
      A0A8J8XZS9, A2WX70, A2ZZS3, Q0JHJ5, Q8RZ32
      Conserved Domains (2) summary
      smart00256
      Location:4 → 39
      FBOX; A Receptor for Ubiquitination Targets
      sd00033
      Location:126 → 148
      LRR_RI; leucine-rich repeat [structural motif]

    4. XM_026022349.1 → XP_025878134.1  F-box/LRR-repeat protein At1g67190

      UniProtKB/TrEMBL
      A0A8J8XZS9, A2WX70, A2ZZS3, Q0JHJ5, Q8RZ32
      Conserved Domains (2) summary
      smart00256
      Location:4 → 39
      FBOX; A Receptor for Ubiquitination Targets
      sd00033
      Location:126 → 148
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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