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    LOC4348112 proline-rich protein 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348112, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4348112
    Gene description
    proline-rich protein 4
    Locus tag
    OSNPB_100148700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Restricted expression toward flowers (RPKM 87.5) See more
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    Genomic context

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    See LOC4348112 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (2930684..2932495, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (2921774..2923693, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene proline-rich protein 2 Neighboring gene protein NRT1/ PTR FAMILY 5.10 Neighboring gene F-box/LRR-repeat protein 4 Neighboring gene proline-rich protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    proline-rich protein 4
    Names
    Os10g0148700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      2930684..2932495 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758431.3 → XP_015613917.1  proline-rich protein 4

      UniProtKB/TrEMBL
      A0A5S6R912, A3C2J6, B8BFR4, Q7XGT6, Q94GB4
      Conserved Domains (2) summary
      PHA03247
      Location:168 → 284
      PHA03247; large tegument protein UL36; Provisional
      pfam01190
      Location:32 → 110
      Pollen_Ole_e_I; Pollen proteins Ole e I like
    Nucleotide Protein
    Heading Accession and Version

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