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    LOC4331200 uncharacterized LOC4331200 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331200, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4331200
    Gene description
    uncharacterized LOC4331200
    Locus tag
    OSNPB_020823800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1063_D06.4; OJ1136_C04.12
    Expression
    Ubiquitous expression in flower buds (RPKM 7.2), leaves before flowering (RPKM 7.1) and 6 other tissues See more
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    Genomic context

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    See LOC4331200 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35379383..35385212)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene caffeic acid 3-O-methyltransferase Neighboring gene uncharacterized LOC4331199 Neighboring gene xyloglucan endotransglucosylase/hydrolase protein 31 Neighboring gene zinc finger protein ZAT5 Neighboring gene pentatricopeptide repeat-containing protein At5g14770, mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4331200
    Names
    Os02g0823800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      35379383..35385212
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771171.2 → XP_015626657.1  uncharacterized protein LOC4331200

      UniProtKB/TrEMBL
      B9F4K6, Q0DWA3, Q6K9X0
      Conserved Domains (1) summary
      pfam10220
      Location:61 → 1136
      Smg8_Smg9

    2. XM_015771170.2 → XP_015626656.1  uncharacterized protein LOC4331200

      UniProtKB/TrEMBL
      B9F4K6, Q0DWA3, Q6K9X0
      Conserved Domains (1) summary
      pfam10220
      Location:61 → 1136
      Smg8_Smg9

    3. XM_015771172.2 → XP_015626658.1  uncharacterized protein LOC4331200

      UniProtKB/TrEMBL
      B9F4K6, Q0DWA3, Q6K9X0
      Conserved Domains (1) summary
      pfam10220
      Location:61 → 1136
      Smg8_Smg9
    Nucleotide Protein
    Heading Accession and Version

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