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    LOC4341550 MORC family CW-type zinc finger protein 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341550, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4341550
    Gene description
    MORC family CW-type zinc finger protein 3
    Locus tag
    OSNPB_060622000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 6.7), flower buds (RPKM 6.3) and 6 other tissues See more
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    Genomic context

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    See LOC4341550 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24986852..24998118, complement)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene putative disease resistance RPP13-like protein 1 Neighboring gene expansin-A16-like Neighboring gene AT-rich interactive domain-containing protein 6 Neighboring gene keratin, type II cytoskeletal 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MORC family CW-type zinc finger protein 3
    Names
    Os06g0622000
    P0040H10.30
    Zinc finger CW-type coiled-coil domain protein 3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      24986852..24998118 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785561.2 → XP_015641047.1  MORC family CW-type zinc finger protein 3 isoform X2

      UniProtKB/TrEMBL
      B9FPZ1, Q0DAW3, Q69XV8
      Conserved Domains (3) summary
      pfam07496
      Location:633 → 676
      zf-CW; CW-type Zinc Finger
      pfam17942
      Location:471 → 612
      Morc6_S5; Morc6 ribosomal protein S5 domain 2-like
      cl00075
      Location:229 → 350
      HATPase; Histidine kinase-like ATPase domain

    2. XM_026026403.1 → XP_025882188.1  MORC family CW-type zinc finger protein 3 isoform X1

      UniProtKB/TrEMBL
      B9FPZ1
      Conserved Domains (2) summary
      pfam07496
      Location:692 → 734
      zf-CW; CW-type Zinc Finger
      pfam13589
      Location:242 → 364
      HATPase_c_3; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

    3. XM_026026404.1 → XP_025882189.1  MORC family CW-type zinc finger protein 3 isoform X3

      UniProtKB/TrEMBL
      B9FPZ1
      Conserved Domains (2) summary
      pfam07496
      Location:692 → 716
      zf-CW; CW-type Zinc Finger
      pfam13589
      Location:242 → 364
      HATPase_c_3; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

    4. XM_026026405.1 → XP_025882190.1  MORC family CW-type zinc finger protein 3 isoform X4

      UniProtKB/TrEMBL
      B9FPZ1
      Conserved Domains (2) summary
      pfam07496
      Location:633 → 657
      zf-CW; CW-type Zinc Finger
      pfam13589
      Location:242 → 364
      HATPase_c_3; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

    5. XM_026026406.1 → XP_025882191.1  MORC family CW-type zinc finger protein 3 isoform X5

      Conserved Domains (1) summary
      pfam13589
      Location:242 → 364
      HATPase_c_3; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

    RNA

    1. XR_003243011.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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