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    LOC4336524 hsp70-Hsp90 organizing protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336524, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336524
    Gene description
    hsp70-Hsp90 organizing protein
    Locus tag
    OSNPB_040538000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in mature seeds (RPKM 5.8), milk grains (RPKM 4.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (27417600..27420994)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (26913291..26916741)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich repeat secretory protein 15 Neighboring gene vacuolar-processing enzyme beta-isozyme 1-like Neighboring gene uncharacterized LOC107280793 Neighboring gene elongation factor G-1, chloroplastic Neighboring gene uncharacterized LOC9271011

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Hsp90 protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hsp70-Hsp90 organizing protein
    Names
    Os04g0538000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      27417600..27420994
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781039.3 → XP_015636525.1  hsp70-Hsp90 organizing protein

      UniProtKB/TrEMBL
      A0A8I3B1T9, B8ASK6, B9FGD0, Q0JBE4
      Conserved Domains (4) summary
      PLN03088
      Location:1 → 108
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      TIGR00990
      Location:251 → 489
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      sd00006
      Location:385 → 413
      TPR; TPR repeat [structural motif]
      pfam17830
      Location:134 → 188
      STI1; STI1 domain
    Nucleotide Protein
    Heading Accession and Version

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