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    LOC4326821 uncharacterized LOC4326821 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326821, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326821
    Gene description
    uncharacterized LOC4326821
    Locus tag
    OSNPB_010932600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 29.1), flower buds (RPKM 27.1) and 6 other tissues See more
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    Genomic context

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    See LOC4326821 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (41559440..41564764)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (40915343..40920651)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene potassium transporter 6-like Neighboring gene uncharacterized LOC9268338 Neighboring gene defensin-like protein 8 Neighboring gene protein RALF-like 33

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4326821
    Names
    Os01g0932600
    P0423A12.14
    P0506E04.35

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      41559440..41564764
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766114.3 → XP_015621600.1  uncharacterized protein LOC4326821 isoform X1

      UniProtKB/TrEMBL
      B8A8S9, B9EW19
      Conserved Domains (2) summary
      smart00875
      Location:172 → 240
      BACK; BTB And C-terminal Kelch
      cl38908
      Location:52 → 163
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

    2. XM_015766115.3 → XP_015621601.1  uncharacterized protein LOC4326821 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VCD5, B8A8S9, Q0JGB5, Q5JMG9
      Conserved Domains (2) summary
      smart00875
      Location:172 → 240
      BACK; BTB And C-terminal Kelch
      cl38908
      Location:52 → 163
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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