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    LOC4348208 pentatricopeptide repeat-containing protein MRL1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348208, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4348208
    Gene description
    pentatricopeptide repeat-containing protein MRL1, chloroplastic
    Locus tag
    OSNPB_100181200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 85.8), roots after flowering (RPKM 58.5) and 3 other tissues See more
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    Genomic context

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    See LOC4348208 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (5577464..5586632, complement)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279223 Neighboring gene wall-associated receptor kinase 5 Neighboring gene uncharacterized LOC4348207 Neighboring gene uncharacterized LOC4348209 Neighboring gene protein MICRORCHIDIA 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein MRL1, chloroplastic
    Names
    Os10g0181200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      5577464..5586632 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759221.2 → XP_015614707.1  pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A2Z5I0, Q8SB10
      Conserved Domains (2) summary
      PLN03218
      Location:103 → 1089
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:499 → 525
      PPR; PPR repeat [structural motif]

    2. XM_015759222.2 → XP_015614708.1  pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X2

      UniProtKB/TrEMBL
      B9G7S3, Q7XGA9
      Conserved Domains (6) summary
      TIGR00756
      Location:145 → 177
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:145 → 171
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:172 → 197
      PPR_1; PPR repeat
      pfam13041
      Location:140 → 189
      PPR_2; PPR repeat family
      pfam13812
      Location:107 → 140
      PPR_3; Pentatricopeptide repeat domain
      cl03252
      Location:206 → 238
      PPR; PPR repeat

    3. XM_015759223.1 → XP_015614709.1  pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X2

      UniProtKB/TrEMBL
      B9G7S3, Q7XGA9
      Conserved Domains (6) summary
      TIGR00756
      Location:145 → 177
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:145 → 171
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:172 → 197
      PPR_1; PPR repeat
      pfam13041
      Location:140 → 189
      PPR_2; PPR repeat family
      pfam13812
      Location:107 → 140
      PPR_3; Pentatricopeptide repeat domain
      cl03252
      Location:206 → 238
      PPR; PPR repeat
    Nucleotide Protein
    Heading Accession and Version

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