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    LOC4327520 uncharacterized LOC4327520 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327520, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4327520
    Gene description
    uncharacterized LOC4327520
    Locus tag
    OSNPB_010826900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1088C09.2; B1088C09.4
    Expression
    Broad expression in roots after flowering (RPKM 14.0), leaves after flowering (RPKM 7.1) and 6 other tissues See more
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    Genomic context

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    See LOC4327520 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (35386758..35400263, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene WRKY transcription factor WRKY24-like Neighboring gene uncharacterized LOC4327519 Neighboring gene laccase-3-like Neighboring gene PRA1 family protein B2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4327520
    Names
    Os01g0826900
    Os01g0827200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      35386758..35400263 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026025019.1 → XP_025880804.1  uncharacterized protein LOC4327520

      Conserved Domains (4) summary
      cd07596
      Location:340 → 568
      BAR_SNX; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins
      pfam04187
      Location:808 → 1027
      Cofac_haem_bdg; Haem-binding uptake, Tiki superfamily, ChaN
      pfam11891
      Location:1134 → 1317
      RETICULATA-like; Protein RETICULATA-related
      cl02563
      Location:156 → 275
      PX_domain; The Phox Homology domain, a phosphoinositide binding module
    Nucleotide Protein
    Heading Accession and Version

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