SRA

ERX004007: Neandertal Amino Acid Capture project
5 ILLUMINA (Illumina Genome Analyzer II) runs: 70.8M spots, 7.2G bases, 12.1Gb downloads

Design: Illumina paired-end sequencing of MMS1_MMS2 library

Submitted by: Max Planck Institute for Evolutionary Anthropology (MPI-EVA)

Study: Neandertal Amino Acid Capture project

PRJEB2071 • ERP000125 • All experiments • All runs

show Abstracthide Abstract

Timing of human protein evolution as revealed by massively parallel capture of Neandertal nuclear DNA sequences

Sample: unknown_human_sequence

SAMEA848599 • ERS007301 • All experiments • All runs

Organism: unclassified sequences

Library:

Name: MMS1_MMS2

Instrument: Illumina Genome Analyzer II

Strategy: WGS

Source: GENOMIC

Selection: other

Layout: PAIRED

Construction protocol: Illumina multiplex library construction protocol.

Spot descriptor:

1 forward index109 reverse

Experiment attributes: (show all 52 attributes...) (hide...)

expected_basecall:read_group_tag=key2:min_match=3:max_mismatch=0:match_edge=full: GAC

expected_basecall:read_group_tag=ACAGTG:min_match=6:max_mismatch=1:match_edge=full: ACAGTGA

expected_basecall:read_group_tag=GATCAG:min_match=6:max_mismatch=1:match_edge=full: GATCAGA

expected_basecall:read_group_tag=ATCACG:min_match=6:max_mismatch=1:match_edge=full: ATCACGA

expected_basecall:read_group_tag=CGATGT:min_match=6:max_mismatch=1:match_edge=full: CGATGTA

expected_basecall:read_group_tag=CTTGTA:min_match=6:max_mismatch=1:match_edge=full: CTTGTAA

expected_basecall:read_group_tag=GGCTAC:min_match=6:max_mismatch=1:match_edge=full: GGCTACA

expected_basecall:read_group_tag=TGACCA:min_match=6:max_mismatch=1:match_edge=full: TGACCAA

expected_basecall:read_group_tag=AAAGCA:min_match=6:max_mismatch=1:match_edge=full: AAAGCAA

expected_basecall:read_group_tag=AAATGC:min_match=6:max_mismatch=1:match_edge=full: AAATGCA

expected_basecall:read_group_tag=AAGCGA:min_match=6:max_mismatch=1:match_edge=full: AAGCGAA

expected_basecall:read_group_tag=AAGGAC:min_match=6:max_mismatch=1:match_edge=full: AAGGACA

expected_basecall:read_group_tag=AATAGG:min_match=6:max_mismatch=1:match_edge=full: AATAGGA

expected_basecall:read_group_tag=ACCCAG:min_match=6:max_mismatch=1:match_edge=full: ACCCAGA

expected_basecall:read_group_tag=ACTCTC:min_match=6:max_mismatch=1:match_edge=full: ACTCTCA

expected_basecall:read_group_tag=AGAAGA:min_match=6:max_mismatch=1:match_edge=full: AGAAGAA

expected_basecall:read_group_tag=AGCATC:min_match=6:max_mismatch=1:match_edge=full: AGCATCA

expected_basecall:read_group_tag=AGGCCG:min_match=6:max_mismatch=1:match_edge=full: AGGCCGA

expected_basecall:read_group_tag=ATACGG:min_match=6:max_mismatch=1:match_edge=full: ATACGGA

expected_basecall:read_group_tag=ATCCTA:min_match=6:max_mismatch=1:match_edge=full: ATCCTAA

expected_basecall:read_group_tag=ATCTAT:min_match=6:max_mismatch=1:match_edge=full: ATCTATA

expected_basecall:read_group_tag=ATGAGC:min_match=6:max_mismatch=1:match_edge=full: ATGAGCA

expected_basecall:read_group_tag=CATTTT:min_match=6:max_mismatch=1:match_edge=full: CATTTTA

expected_basecall:read_group_tag=CCGCAA:min_match=6:max_mismatch=1:match_edge=full: CCGCAAA

expected_basecall:read_group_tag=CTCAGA:min_match=6:max_mismatch=1:match_edge=full: CTCAGAA

expected_basecall:read_group_tag=GAATAA:min_match=6:max_mismatch=1:match_edge=full: GAATAAA

expected_basecall:read_group_tag=GCCGCG:min_match=6:max_mismatch=1:match_edge=full: GCCGCGA

expected_basecall:read_group_tag=GCTCCA:min_match=6:max_mismatch=1:match_edge=full: GCTCCAA

expected_basecall:read_group_tag=GGCACA:min_match=6:max_mismatch=1:match_edge=full: GGCACAA

expected_basecall:read_group_tag=GGCCTG:min_match=6:max_mismatch=1:match_edge=full: GGCCTGA

expected_basecall:read_group_tag=TCGGCA:min_match=6:max_mismatch=1:match_edge=full: TCGGCAA

expected_basecall:read_group_tag=TCTACC:min_match=6:max_mismatch=1:match_edge=full: TCTACCA

expected_basecall:read_group_tag=TGCCAT:min_match=6:max_mismatch=1:match_edge=full: TGCCATA

expected_basecall:read_group_tag=TGCTGG:min_match=6:max_mismatch=1:match_edge=full: TGCTGGA

expected_basecall:read_group_tag=AGGTTT:min_match=6:max_mismatch=1:match_edge=full: AGGTTTA

expected_basecall:read_group_tag=AGTCAA:min_match=6:max_mismatch=1:match_edge=full: AGTCAAA

expected_basecall:read_group_tag=AGTTCC:min_match=6:max_mismatch=1:match_edge=full: AGTTCCA

expected_basecall:read_group_tag=ATGTCA:min_match=6:max_mismatch=1:match_edge=full: ATGTCAA

expected_basecall:read_group_tag=CCGTCC:min_match=6:max_mismatch=1:match_edge=full: CCGTCCA

expected_basecall:read_group_tag=GTAGAG:min_match=6:max_mismatch=1:match_edge=full: GTAGAGA

expected_basecall:read_group_tag=GTGAAA:min_match=6:max_mismatch=1:match_edge=full: GTGAAAA

expected_basecall:read_group_tag=GTGGCC:min_match=6:max_mismatch=1:match_edge=full: GTGGCCA

expected_basecall:read_group_tag=GTTTCG:min_match=6:max_mismatch=1:match_edge=full: GTTTCGA

expected_basecall:read_group_tag=CGTACG:min_match=6:max_mismatch=1:match_edge=full: CGTACGA

expected_basecall:read_group_tag=GAGTGG:min_match=6:max_mismatch=1:match_edge=full: GAGTGGA

expected_basecall:read_group_tag=GGTAGC:min_match=6:max_mismatch=1:match_edge=full: GGTAGCA

expected_basecall:read_group_tag=ACTTGA:min_match=6:max_mismatch=1:match_edge=full: ACTTGAA

expected_basecall:read_group_tag=CAGATC:min_match=6:max_mismatch=1:match_edge=full: CAGATCA

expected_basecall:read_group_tag=GCCAAT:min_match=6:max_mismatch=1:match_edge=full: GCCAATA

expected_basecall:read_group_tag=TAGCTT:min_match=6:max_mismatch=1:match_edge=full: TAGCTTA

expected_basecall:read_group_tag=TTAGGC:min_match=6:max_mismatch=1:match_edge=full: TTAGGCA

center_name: MPI-EVA

Runs: 5 runs, 70.8M spots, 7.2G bases, 12.1Gb

Run	# of Spots	# of Bases	Size	Published
ERR011028	14,970,665	1.5G	2.6Gb	2011-03-18
ERR011029	14,999,067	1.5G	2.6Gb	2011-03-18
ERR011030	14,731,173	1.5G	2.5Gb	2011-03-18
ERR011031	12,923,003	1.3G	2.2Gb	2011-03-18
ERR011032	13,183,979	1.3G	2.2Gb	2011-03-18

ID:: 36369

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity