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SRX21336437: GSM7706662: Febrile [8F]; Plasmodium falciparum 3D7; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 1.7M spots, 248.6M bases, 120.5Mb downloads

External Id: GSM7706662_r1
Submitted by: Center for Biotechnology and Bioinformatics (CEBIB), Biochemistry, University of Nairobi
Study: Distinct transcriptomic signatures define febrile malaria depending on initial infective states, asymptomatic or uninfected
show Abstracthide Abstract
Cumulative malaria parasite exposure in endemic regions often results in the acquisition of partial immunity and asymptomatic infections. There is limited information on how host-parasite interactions mediate maintenance of chronic symptomless infections that sustain malaria transmission. Here, we have determined the gene expression profiles of the parasite population and the corresponding host peripheral blood mononuclear cells (PBMCs) from 21 children (<15 years). We compared children who were defined as uninfected, asymptomatic and those with febrile malaria. Children with asymptomatic infections had a parasite transcriptional profile characterized by a bias toward trophozoite stage (~12 hours-post invasion) parasites and low parasite levels, while earlier ring stage parasites were characteristic of febrile malaria. The host response of asymptomatic children was characterized by downregulated transcription of genes associated with inflammatory responses, compared with children with febrile malaria, which may lead to less cytoadherence of more mature parasite stages. Interestingly, the host responses during febrile infections that followed an asymptomatic infection featured stronger inflammatory responses, whereas the febrile host responses from previously uninfected children featured increased humoral immune responses. The priming effect of prior asymptomatic infection may explain the blunted acquisition of antibody responses seen to malaria antigens following natural exposure or vaccination in malaria endemic areas. Overall design: To investigate the gene expression profiles of Plasmodium falciparum parasite isolates collected from paired asymptomatic [A] and subsequent febrile [F] malaria infections
Sample: Febrile [8F]
SAMN36943624 • SRS18581714 • All experiments • All runs
Library:
Name: GSM7706662
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: using the ISOLATE II RNA Mini Kit (Bioline) libraries for RNA-seq were prepared using the NEBNextTM Ultra II FS DNA library preparation kit (New England Biolabs) following manufacturers protocol
Runs: 1 run, 1.7M spots, 248.6M bases, 120.5Mb
Run# of Spots# of BasesSizePublished
SRR256092791,657,627248.6M120.5Mb2024-02-14

ID:
28773888

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