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SRX21363083: Amazona rhodocorytha UCEs
1 ILLUMINA (Illumina HiSeq 2500) run: 749,861 spots, 376.4M bases, 135.5Mb downloads

Design: Sequence capture of ultraconserved elements
Submitted by: Museu de Zoologia da Universidade de Sao Paulo
Study: Genetic Variability and Kinship Analyses of Seized Red-Browed Amazon, Amazona rhodocorytha (Aves, Psittacidae)
show Abstracthide Abstract
Analyzing genetic variability and kinship relations is essential to guide conservation management plans for threatened species. The Red-browed Amazon (Amazona rhodocorytha) is one of the four Amazona parrots that are endemic to remnants of the Atlantic Forest, classified as Vulnerable (IUCN) owing to habitat loss and fragmentation and trapping for the illegal pet trade. At the end of 2021, 19 Red-browed Amazons were rescued from illegal trade in the Espirito Santo state, Brazil, including 14 nestlings reportedly captured in the Sooretama Biological Reserve, which provided the first opportunity to address the genetic parameters of a wild population of this threatened parrot. We used Single-Nucleotide Polymorphism (SNP) data to assess the genetic diversity and kinship relations between the rescued birds. We observed high heterozygosity levels and low inbreeding coefficients. Principal Component Analysis revealed the presence of at least two distinct genetic groups, suggesting past isolation followed by secondary contact. Our results suggest that the population from Sooretama is an important genetic and demographic repository of the Red-browed Amazon, and the presence of individuals from the two genetic lineages in the same area reduces concerns about potential inbreeding depression in rehabilitation and reintroduction plans and also inspires further investigations on historical and contemporary population structuring.
Sample: Amazona rhodocorytha UCEs
SAMN36986152 • SRS18607468 • All experiments • All runs
Library:
Name: P001_WD07
Instrument: Illumina HiSeq 2500
Strategy: Targeted-Capture
Source: GENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 749,861 spots, 376.4M bases, 135.5Mb
Run# of Spots# of BasesSizePublished
SRR25636415749,861376.4M135.5Mb2023-08-14

ID:
28801236

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