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SRX23051059: GSM7996432: WHITE-COLLAR MUTANT IN LIGHT REPLICA 1; Neurospora crassa; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 20M spots, 5.9G bases, 1.7Gb downloads

External Id: GSM7996432_r1
Submitted by: Genetics, University of Seville
Study: VE-1 requires the WC-1 photoreceptor for light-dependent inhibition of perithecial developmentin Neurospora crassa
show Abstracthide Abstract
The observation that light led to a large reduction in the number of perithecia in the ?ve-1 strain suggested that WC-1, the photoreceptor component of the WCC transcription factor complex, may participate in this regulation. Therefore, we analyzed the sexual phenotype of a double mutant with deletions in ve-1 and wc-1 Overall design: Pairwise comparisons of expression profiles obtained from RNA extracted from sexual tissue of the ve-1 mutant, the white-collar mutant and the double mutant vs. the wild-type strain in dark and light
Sample: WHITE-COLLAR MUTANT IN LIGHT REPLICA 1
SAMN39181129 • SRS20011590 • All experiments • All runs
Library:
Name: GSM7996432
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: all tissues were immediately frozen in liquid nitrogen and stored at -80°C. Tissue samples from biological replicates were pooled for RNA extraction at each sample point. Mycelia was grinded using a precooled mortar and pestle, homogenized with TRI REAGENT (Invitrogen), and then phase separated by adding chloroform. The nucleic acid phase was precipitated with isopropanol, washed with 75% ethanol, and solubilized in RNase-free water. RNA clean-up and DNase treatment was performed using Nucleo-Spin RNA (MACHEREY-NAGEL) and RNase-free DNase Set (QIAGEN), following the manufacturer procedures. RNA quantity and quality were analyzed using Nano-drop ND-1000 Poly-A selection and cDNA libraries preparation for RNA were prepared according to the Illumina mRNA Sample Preparation Guide Illumina RNA-seq strand specific first-strand
Runs: 1 run, 20M spots, 5.9G bases, 1.7Gb
Run# of Spots# of BasesSizePublished
SRR2737467120,002,9795.9G1.7Gb2024-08-23

ID:
31130806

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