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SRX25503031: Bacterial 16S of Saint-Leonard cave microbiome : 0.2um filtered groundwater
1 ILLUMINA (Illumina MiSeq) run: 41,452 spots, 24.9M bases, 15.8Mb downloads

Design: B341F (CCTACGGGAGGCAGCAG); B785R (GACTACCGGGGTATCTAATCC); 2x 300 bp
Submitted by: Universite du Quebec a Montreal
Study: Characterizing the planktonic and sedimentary communities of bacteria, archaea and eukaryotes in an urban glaciotectonic cave
show Abstracthide Abstract
The terrestrial subsurface harbors unique microbial communities that play important biogeochemical roles and allow to study a yet unknown fraction of the Earth's biodiversity. The Saint-Leonard cave in Montreal city (Quebec, Canada) is of glaciotectonic origin. Its speleogenesis traces back to the withdrawal of the Laurentide Ice Sheet, 13 000 years ago, during which the moving glacier dislocated the sedimentary rock layers. Our study is the first to investigate the microbial communities of the Saint-Leonard cave. By using amplicon sequencing, we analyzed the taxonomic diversity and composition of bacterial, archaeal and eukaryotes communities living in the groundwater (0.1um- and 0.2 um-filtered water), in the sediments and in the surface soils.
Sample: Bacterial 16S of Saint-Leonard cave microbiome : 0.2um filtered groundwater
SAMN42780643 • SRS22157792 • All experiments • All runs
Library:
Name: E3-2-bac
Instrument: Illumina MiSeq
Strategy: AMPLICON
Source: GENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 41,452 spots, 24.9M bases, 15.8Mb
Run# of Spots# of BasesSizePublished
SRR3002397241,45224.9M15.8Mb2024-07-29

ID:
34455925

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