GBMF Marine Phage Sequencing Project - SRA

SRX042501: GBMF Marine Phage Sequencing Project
2 LS454 (454 GS FLX Titanium) runs: 227,148 spots, 110.5M bases, 245Mb downloads

UUID: a8b27f8d-074a-4f7c-af16-246a26d68b52

Design: International collaboration to sequence, assemble, and annotate approximately 200 diverse marine phage/virus genomes and to sequence approximately 50 viral metagenomes from an array of marine environments. DNA sequencing using 454 technology.

Submitted by: Broad Institute (BI)

Study: Pacific Ocean uncultured phage metagenome

PRJNA47437 • SRP005748 • All experiments • All runs

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ANME Metagenome - Suboxic seawater overlying carbonate mound formed by hydrate crystalization and expansion. Sediments actively releasing methane to the water column; sample description: TFF concentrated; 0.22 micron filtered; CsCl-gradient; DNAse treatment. Amplified via MDA with phi29 polymerase.

Sample: Generic sample from marine metagenome

SAMN00215775 • SRS172706 • All experiments • All runs

Organism: marine metagenome

Library:

Name: 454-4152

Instrument: 454 GS FLX Titanium

Strategy: WGS

Source: METAGENOMIC

Selection: PCR

Layout: SINGLE

Spot descriptor:

barcode

Group tag	Basecalls
Vienna	TCACAC

11 forward

Experiment attributes: (show all 6 attributes...) (hide...)

analysis_type: DNA Viral 454 Alignment and Assembly

gssr_id: 46567.1

lsid: BROAD:SEQUENCING_SAMPLE:46567.1

material_type: Genomic DNA

project: G3254

work_request: 21185

Pipeline: show...hide...

Name	Step	Program	Version
base caller	2010-04-17 19:17:48.0	454BaseCaller	2.3

Runs: 2 runs, 227,148 spots, 110.5M bases, 245Mb

Run	# of Spots	# of Bases	Size	Published
SRR100454	223,500	109.2M	241.8Mb	2011-06-30
SRR107216	3,648	1.2M	3.2Mb	2011-06-30

ID:: 50773

SRA

Sequence Read Archive

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