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Items: 3

1.

VIPR HMM: A hidden Markov model for detecting recombination with microbial detection arrays

(Submitter supplied) In previous work, we developed a novel algorithm, VIPR, for analyzing diagnostic microarray data using a training set of empirical hybridizations of infected and uninfected samples. We have expanded up our previous implementation by incorporating a hidden Markov model (HMM) to detect recombination. We trained our HMM on a set of nonrecombinant parental viruses and applied our method to 11 recombinant alphaviruses and 4 recombinant flaviviruses hybridized to a diagnostic microarray in order to evaluate performance of the HMM. more...
Organism:
Peribunyaviridae; Chlorocebus aethiops; Flaviviridae; Togaviridae; Alphavirus; Flavivirus
Type:
Other
Platform:
GPL15022
114 Samples
Download data: GPR
Series
Accession:
GSE34490
ID:
200034490

PubMed Full text in PMC Similar studies Analyze with GEO2R

2.

Recombination Detection Microarray Release I (R1.1Tiled)

(Submitter supplied) http://www.chem.agilent.com/Library/usermanuals/Public/G4410-90010_CGH_Enzymatic_Protocol_v6.2.pdf
Organism:
Togaviridae; Flaviviridae; Peribunyaviridae
1 Series
114 Samples
Download data
Platform
Accession:
GPL15022
ID:
100015022

3.

Recombinant 14-028

Organism:
Alphavirus; Chlorocebus aethiops
Source name:
infected culture
Platform:
GPL15022
Series:
GSE34490
Download data: GPR
Sample
Accession:
GSM850062
ID:
300850062

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db=gds|term=GSM850062[Accession]|query=1|qty=7|blobid=MCID_673431e9951b4d01ee1b8c46|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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