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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 17, 2012 |
| Title |
Recombination Detection Microarray Release I (R1.1Tiled) |
| Technology type |
spotted DNA/cDNA |
| Distribution |
custom-commercial |
| Organisms |
Togaviridae; Flaviviridae; Peribunyaviridae |
| Manufacturer |
Agilent |
| Manufacture protocol |
http://www.chem.agilent.com/Library/usermanuals/Public/G4410-90010_CGH_Enzymatic_Protocol_v6.2.pdf
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| Submission date |
Dec 16, 2011 |
| Last update date |
Dec 29, 2011 |
| Contact name |
Adam F Allred |
| E-mail(s) |
adam.f.allred@gmail.com
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| Organization name |
Washington University in St. Louis, School of Medicine
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| Street address |
660 S. Euclid
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| City |
St. Louis |
| State/province |
MO |
| ZIP/Postal code |
63139 |
| Country |
USA |
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| Samples (114)
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GSM850056, GSM850057, GSM850058, GSM850059, GSM850060, GSM850061
GSM850062, GSM850063, GSM850064, GSM850065, GSM850066, GSM850067, GSM850068, GSM850069, GSM850070, GSM850071, GSM850072, GSM850073, GSM850074, GSM850075, GSM850076, GSM850077, GSM850078, GSM850079, GSM850080, GSM850081, GSM850082, GSM850083, GSM850084, GSM850085, GSM850086, GSM850087, GSM850088, GSM850089, GSM850090, GSM850091, GSM850092, GSM850093, GSM850094, GSM850095, GSM850096, GSM850097, GSM850098, GSM850099, GSM850100, GSM850101, GSM850102, GSM850103, GSM850104, GSM850105, GSM850106, GSM850107, GSM850108, GSM850109, GSM850110, GSM850111, GSM850112, GSM850113, GSM850114, GSM850115, GSM850116, GSM850117, GSM850118, GSM850119, GSM850120, GSM850121, GSM850122, GSM850123, GSM850124, GSM850125, GSM850126, GSM850127, GSM850128, GSM850129, GSM850130, GSM850131, GSM850132, GSM850133, GSM850134, GSM850135, GSM850136, GSM850137, GSM850138, GSM850139, GSM850140, GSM850141, GSM850142, GSM850143, GSM850144, GSM850145, GSM850146, GSM850147, GSM850148, GSM850149, GSM850150, GSM850151, GSM850152, GSM850153, GSM850154, GSM850155, GSM850156, GSM850157, GSM850158, GSM850159, GSM850160, GSM850161, GSM850162, GSM850163, GSM850164, GSM850165, GSM850166, GSM850167, GSM850168, GSM850169
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| Series (1) |
| GSE34490 |
VIPR HMM: A hidden Markov model for detecting recombination with microbial detection arrays |
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| Data table header descriptions |
| ID |
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| GI |
Genbank ID for sequence from which the probe was designed |
| Taxa_SpeciesName |
Species corresponding to the sequence from which the probe was designed |
| Taxa_FamilyName |
Family corresponding to the sequence from which the probe was designed |
| SEQUENCE |
Probe sequence |
| Data table |
| ID |
GI |
Taxa_SpeciesName |
Taxa_FamilyName |
SEQUENCE |
| R1.1_000001 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
ATAGGCGGCGCATGAGAGAAGCCCAGACCAATTACCTACCCAAAATGGAGAAAGTTCACG |
| R1.1_000002 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
CGTGAACTTTCTCCATTTTGGGTAGGTAATTGGTCTGGGCTTCTCTCATGCGCCGCCTAT |
| R1.1_000003 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
ACATCGAGGAAGACAGCCCATTCCTCAGAGCTTTGCAGCGGAGCTTCCCGCAGTTTGAGG |
| R1.1_000004 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
CCTCAAACTGCGGGAAGCTCCGCTGCAAAGCTCTGAGGAATGGGCTGTCTTCCTCGATGT |
| R1.1_000005 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
AAGCCAAGCAGGTCACTGATAATGACCATGCTAATGCCAGAGCGTTTTCGCATCTGGCTT |
| R1.1_000006 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
AAGCCAGATGCGAAAACGCTCTGGCATTAGCATGGTCATTATCAGTGACCTGCTTGGCTT |
| R1.1_000007 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
AACTGATCGAAACGGAGGTGGACCCATCCGACACGATCCTTGACATTGGAAGTGCGCCCG |
| R1.1_000008 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
CGGGCGCACTTCCAATGTCAAGGATCGTGTCGGATGGGTCCACCTCCGTTTCGATCAGTT |
| R1.1_000009 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
GCAGAATGTATTCTAAGCACAAGTATCATTGTATCTGTCCGATGAGATGTGCGGAAGATC |
| R1.1_000010 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
GATCTTCCGCACATCTCATCGGACAGATACAATGATACTTGTGCTTAGAATACATTCTGC |
| R1.1_000011 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
ACAGATTGTATAAGTATGCAACTAAGCTGAAGAAAAACTGTAAGGAAATAACTGATAAGG |
| R1.1_000012 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
CCTTATCAGTTATTTCCTTACAGTTTTTCTTCAGCTTAGTTGCATACTTATACAATCTGT |
| R1.1_000013 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
TGGACAAGAAAATGAAGGAGCTCGCCGCCGTCATGAGCGACCCTGACCTGGAAACTGAGA |
| R1.1_000014 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
TCTCAGTTTCCAGGTCAGGGTCGCTCATGACGGCGGCGAGCTCCTTCATTTTCTTGTCCA |
| R1.1_000015 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
TGTGCCTCCACGACGACGAGTCGTGTCGCTACGAAGGGCAAGTCGCTGTTTACCAGGATG |
| R1.1_000016 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
CATCCTGGTAAACAGCGACTTGCCCTTCGTAGCGACACGACTCGTCGTCGTGGAGGCACA |
| R1.1_000017 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
ACGCGGTTGACGGACCGACAAGTCTCTATCACCAAGCCAATAAGGGAGTTAGAGTCGCCT |
| R1.1_000018 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
AGGCGACTCTAACTCCCTTATTGGCTTGGTGATAGAGACTTGTCGGTCCGTCAACCGCGT |
| R1.1_000019 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
GGATAGGCTTTGACACCACCCCTTTTATGTTTAAGAACTTGGCTGGAGCATATCCATCAT |
| R1.1_000020 |
323714 |
Venezuelan equine encephalitis virus strain TC-83, complete genome |
Togaviridae |
ATGATGGATATGCTCCAGCCAAGTTCTTAAACATAAAAGGGGTGGTGTCAAAGCCTATCC |
Total number of rows: 43414
Table truncated, full table size 6005 Kbytes.
| Supplementary data files not provided |
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