GEO DataSets

(Submitter supplied) The fraction of dissolved dimethylsulfoniopropionate (DMSPd) converted by marine bacterioplankton into the climate-active gas dimethylsulfide (DMS) varies widely in the ocean, with the factors that determine this value still largely unknown. One current hypothesis is that the ratio of DMS formation:DMSP demethylation is determined by DMSP availability, with 'availability' in both an absolute sense (i.e., concentration in seawater) and in a relative sense (i.e., proportionally to other labile organic S compounds) being proposed as the critical factor. more...

Organism:

Ruegeria pomeroyi DSS-3; Jannaschia sp. CCS1; Ruegeria sp. TM1040; Oceanicola granulosus HTCC2516; Sulfitobacter sp. NAS-14.1; Maritimibacter alkaliphilus; marine metagenome; Sulfitobacter sp. EE-36; Roseovarius nubinhibens ISM; Pseudooceanicola batsensis HTCC2597; Sagittula stellata E-37; Yoonia vestfoldensis SKA53; Roseobacter sp. MED193; Roseovarius sp. 217

Type:

Expression profiling by array

Platform:

GPL10323

20 Samples

Download data: GPR

(Submitter supplied) Dimethylsufoniopropionate (DMSP) is an important and abundant organic sulfur compound and an important substrate for marine bacterioplankton. The Roseobacter clade of marine alpha-proteobacteria, including Silicibacter pomeroyi strain DSS3, are known to be a key phylogenetic group involved in DMSP degradaton. The fate of DMSP has important implications for the global sulfur cycle, but the genes involved in this process and their regulation are largely unknown. more...

Organism:

Ruegeria pomeroyi; Ruegeria pomeroyi DSS-3

Type:

Expression profiling by array

Platform:

GPL4067

24 Samples

Download data

(Submitter supplied) D. shibae was cultivated under changing light regimes and samples for transcriptome and metabolome were taken.

Organism:

Dinoroseobacter shibae DFL 12 = DSM 16493

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18337

17 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Dinoroseobacter shibae DFL 12 = DSM 16493

Type:

Expression profiling by array; Expression profiling by high throughput sequencing

Platforms:

GPL18337 GPL11243

25 Samples

Download data: TXT

(Submitter supplied) Transcriptome of D. shibae 5 h in the light and dark after 12 days in co-culture with the dinoflagellate P. minimum.

Organism:

Dinoroseobacter shibae DFL 12 = DSM 16493

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18337

6 Samples

Download data: TXT

(Submitter supplied) Comparison of the transcriptome of D. shibae 5 h in the light versus 5 h in the dark after 12 days in co-culture with the dinoflagellate P. minimum.

Organism:

Dinoroseobacter shibae DFL 12 = DSM 16493

Type:

Expression profiling by array

Platform:

GPL11243

2 Samples

Download data: TXT