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| Status |
Public on Feb 01, 2014 |
| Title |
Transcriptome of Dinoroseobacter shibae in co-culture with the dinoflagellate Prorocentrum minimum |
| Organism |
Dinoroseobacter shibae DFL 12 = DSM 16493 |
| Experiment type |
Expression profiling by array
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
25009539 |
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| Submission date |
Jan 09, 2014 |
| Last update date |
Aug 01, 2019 |
| Contact name |
Jürgen Tomasch |
| E-mail(s) |
tomasch@alga.cz
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| Organization name |
Center Algatech, Institute of Microbiology of the Czech Academy of Science
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| Lab |
Anoxygenic Phototrophs
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| Street address |
Novohradská 237
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| City |
Třeboň |
| ZIP/Postal code |
37901 |
| Country |
Czech Republic |
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| Platforms (2) |
| GPL11243 |
Agilent-020623 Dinoroseobacter shibae DFL 12 15k Oligo Microarray (Feature Number version) |
| GPL18337 |
Illumina Genome Analyzer IIx (Dinoroseobacter shibae DFL 12 = DSM 16493) |
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| Samples (25)
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| GSM1302081 |
D. shibae 5 h in the light vs. 5 h in the dark after 12 days in co-culture with P. minimum, LD1 |
| GSM1302082 |
D. shibae 5 h in the light vs. 5 h in the dark after 12 days in co-culture with P. minimum, LD2 |
| GSM1302412 |
D. shibae 5 h in the light after 12 days in co-culture with the dinoflagellate P. minimum, replicate 1 |
| GSM1302413 |
D. shibae 5 h in the light after 12 days in co-culture with the dinoflagellate P. minimum, replicate 2 |
| GSM1376584 |
D. shibae 5 h in the light after 12 days in coculture with the dinoflagellate P. Minimum, replicate 1 |
| GSM1376585 |
D. shibae 5 h in the light after 12 days in coculture with the dinoflagellate P. Minimum, replicate 2 |
| GSM1376586 |
D. shibae 5 h in the dark after 12 days in coculture with the dinoflagellate P. Minimum, replicate 1 |
| GSM1376587 |
D. shibae 5 h in the dark after 12 days in coculture with the dinoflagellate P. Minimum, replicate 2 |
| GSM1376588 |
Dshibae, first run, day 2, 12 h light |
| GSM1376589 |
Dshibae, first run, day 3, 4 h dark |
| GSM1376590 |
Dshibae, first run, day 3, 12 h dark |
| GSM1376591 |
Dshibae, first run, day 3, 4 h light |
| GSM1376592 |
Dshibae, first run, day 3, 8 h light |
| GSM1376593 |
Dshibae, first run, day 3, 12 h dark-2 |
| GSM1376594 |
Dshibae, first run, day 2, 4 h light |
| GSM1376595 |
Dshibae, first run, day 3, 12 h light |
| GSM1376596 |
Dshibae, second run, day 2, 12 h dark |
| GSM1376597 |
Dshibae, second run, day 2, 1 h light |
| GSM1376598 |
Dshibae, second run, day 2, 4 h light |
| GSM1376599 |
Dshibae, second run, day 3, 12 h light |
| GSM1376600 |
Dshibae, second run, day 2, 8 h light |
| GSM1376601 |
Dshibae, second run, day 3, 4 h light |
| GSM1376602 |
Dshibae, second run, day 2, 12 h light |
| GSM1376603 |
Dshibae, second run, day 3, 12 h dark |
| GSM1376604 |
Dshibae, second run, day 2, 4 h dark |
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| This SuperSeries is composed of the following SubSeries: |
| GSE53846 |
Light-dark changes in the transcriptome of Dinoroseobacter shibae in co-culture with the dinoflagellate Prorocentrum minimum |
| GSE53871 |
Transcriptome of Dinoroseobacter shibae in co-culture with the dinoflagellate Prorocentrum minimum [RNA-seq] |
| GSE57164 |
Transcriptome of Dinoroseobacter shibae under changeing light regimes |
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| Relations |
| BioProject |
PRJNA234048 |
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