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| Status |
Public on Jul 01, 2014 |
| Title |
Transcriptome of Dinoroseobacter shibae under changeing light regimes |
| Organism |
Dinoroseobacter shibae DFL 12 = DSM 16493 |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
D. shibae was cultivated under changing light regimes and samples for transcriptome and metabolome were taken.
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| Overall design |
Two independent cultivations in a Chemostat have been performed. Each reactor was run for 3 light/dark-cycles of 12h/12h. Sampling started from the second cycle and continued to the third cycle.
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| Contributor(s) |
Bill N, Tomasch J, Schmidt-Hohagen K, Jarek M, Bhuju S, Wagner-Döbler I, Schomburg D |
| Citation(s) |
25009539 |
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| Submission date |
Apr 29, 2014 |
| Last update date |
Aug 01, 2019 |
| Contact name |
Jürgen Tomasch |
| E-mail(s) |
tomasch@alga.cz
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| Organization name |
Center Algatech, Institute of Microbiology of the Czech Academy of Science
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| Lab |
Anoxygenic Phototrophs
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| Street address |
Novohradská 237
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| City |
Třeboň |
| ZIP/Postal code |
37901 |
| Country |
Czech Republic |
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| Platforms (1) |
| GPL18337 |
Illumina Genome Analyzer IIx (Dinoroseobacter shibae DFL 12 = DSM 16493) |
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| Samples (17)
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| GSM1376591 |
Dshibae, first run, day 3, 4 h light |
| GSM1376592 |
Dshibae, first run, day 3, 8 h light |
| GSM1376593 |
Dshibae, first run, day 3, 12 h dark-2 |
| GSM1376594 |
Dshibae, first run, day 2, 4 h light |
| GSM1376595 |
Dshibae, first run, day 3, 12 h light |
| GSM1376596 |
Dshibae, second run, day 2, 12 h dark |
| GSM1376597 |
Dshibae, second run, day 2, 1 h light |
| GSM1376598 |
Dshibae, second run, day 2, 4 h light |
| GSM1376599 |
Dshibae, second run, day 3, 12 h light |
| GSM1376600 |
Dshibae, second run, day 2, 8 h light |
| GSM1376601 |
Dshibae, second run, day 3, 4 h light |
| GSM1376602 |
Dshibae, second run, day 2, 12 h light |
| GSM1376603 |
Dshibae, second run, day 3, 12 h dark |
| GSM1376604 |
Dshibae, second run, day 2, 4 h dark |
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| This SubSeries is part of SuperSeries: |
| GSE53967 |
Transcriptome of Dinoroseobacter shibae in co-culture with the dinoflagellate Prorocentrum minimum |
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| Relations |
| BioProject |
PRJNA246385 |
| SRA |
SRP041748 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE57164_RAW.tar |
1.7 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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