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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_009628.1 RefSeqGene
- Range
-
5001..52786
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_49
mRNA and Protein(s)
-
NM_000246.4 → NP_000237.2 MHC class II transactivator isoform 2
See identical proteins and their annotated locations for NP_000237.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice junction at the 5' end of an exon compared to variant 1. The resulting isoform (2) is 1 aa shorter compared to isoform 1.
- Source sequence(s)
-
AC133065, KF459560
- Consensus CDS
-
CCDS10544.1
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
- UniProtKB/TrEMBL
-
A0A0B4J1S1
- Related
- ENSP00000316328.8, ENST00000324288.14
- Conserved Domains (4) summary
-
- cd00116
Location:789 → 1114
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00031
Location:989 → 1016
- LRR_1; leucine-rich repeat [structural motif]
- sd00034
Location:1071 → 1101
- LRR_AMN1; leucine-rich repeat [structural motif]
- pfam05729
Location:414 → 583
- NACHT; NACHT domain
-
NM_001286402.1 → NP_001273331.1 MHC class II transactivator isoform 1
See identical proteins and their annotated locations for NP_001273331.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AC133065, BC007406, BE247223, BM193016
- Consensus CDS
-
CCDS73826.1
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
- UniProtKB/TrEMBL
-
A0A087X2I7
- Related
- ENSP00000485010.1, ENST00000618327.4
- Conserved Domains (4) summary
-
- cd00116
Location:790 → 1115
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00031
Location:990 → 1017
- LRR_1; leucine-rich repeat [structural motif]
- sd00034
Location:1072 → 1102
- LRR_AMN1; leucine-rich repeat [structural motif]
- pfam05729
Location:415 → 584
- NACHT; NACHT domain
-
NM_001286403.2 → NP_001273332.1 MHC class II transactivator isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses two alternate splice junctions and lacks two alternate coding exons compared to variant 1. The resulting isoform (3) has the same N- and C-termini but is shorter compared to isoform 1.
- Source sequence(s)
-
AC133065, AY084054, BC007406, BE247223, BM193016
- Consensus CDS
-
CCDS66943.1
- UniProtKB/Swiss-Prot
-
P33076
- Related
- ENSP00000371257.5, ENST00000381835.9
- Conserved Domains (2) summary
-
- cd00116
Location:299 → 530
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00034
Location:402 → 429
- LRR_AMN1; leucine-rich repeat [structural motif]
-
NM_001379330.1 → NP_001366259.1 MHC class II transactivator isoform 4
Status: REVIEWED
- Source sequence(s)
-
AC133065
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
- Conserved Domains (4) summary
-
- cd00116
Location:741 → 1066
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00031
Location:941 → 968
- LRR_1; leucine-rich repeat [structural motif]
- sd00034
Location:1023 → 1053
- LRR_AMN1; leucine-rich repeat [structural motif]
- pfam05729
Location:366 → 535
- NACHT; NACHT domain
-
NM_001379331.1 → NP_001366260.1 MHC class II transactivator isoform 5
Status: REVIEWED
- Source sequence(s)
-
AC133065
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
- Conserved Domains (4) summary
-
- cd00116
Location:740 → 1065
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00031
Location:940 → 967
- LRR_1; leucine-rich repeat [structural motif]
- sd00034
Location:1022 → 1052
- LRR_AMN1; leucine-rich repeat [structural motif]
- pfam05729
Location:365 → 534
- NACHT; NACHT domain
-
NM_001379332.1 → NP_001366261.1 MHC class II transactivator isoform 1
Status: REVIEWED
- Source sequence(s)
-
AC133065, KF459560
- Consensus CDS
-
CCDS73826.1
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
- UniProtKB/TrEMBL
-
A0A087X2I7
- Conserved Domains (4) summary
-
- cd00116
Location:790 → 1115
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00031
Location:990 → 1017
- LRR_1; leucine-rich repeat [structural motif]
- sd00034
Location:1072 → 1102
- LRR_AMN1; leucine-rich repeat [structural motif]
- pfam05729
Location:415 → 584
- NACHT; NACHT domain
-
NM_001379333.1 → NP_001366262.1 MHC class II transactivator isoform 2
Status: REVIEWED
- Source sequence(s)
-
AC133065, KF459560
- Consensus CDS
-
CCDS10544.1
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
- UniProtKB/TrEMBL
-
A0A0B4J1S1
- Conserved Domains (4) summary
-
- cd00116
Location:789 → 1114
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00031
Location:989 → 1016
- LRR_1; leucine-rich repeat [structural motif]
- sd00034
Location:1071 → 1101
- LRR_AMN1; leucine-rich repeat [structural motif]
- pfam05729
Location:414 → 583
- NACHT; NACHT domain
-
NM_001379334.1 → NP_001366263.1 MHC class II transactivator isoform 6
Status: REVIEWED
- Source sequence(s)
-
AC133065, KF459560
- UniProtKB/TrEMBL
-
Q66X48
- Conserved Domains (3) summary
-
- cd00116
Location:766 → 1091
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00034
Location:963 → 990
- LRR_AMN1; leucine-rich repeat [structural motif]
- pfam05729
Location:391 → 560
- NACHT; NACHT domain
RNA
-
NR_104444.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses an alternate splice junction and lacks an alternate exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC133065, AY084054, BC007406, BE247223, BM193016, U31931, X74301
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000016.10 Reference GRCh38.p14 Primary Assembly
- Range
-
10866206..10943021
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011522485.3 → XP_011520787.1 MHC class II transactivator isoform X1
See identical proteins and their annotated locations for XP_011520787.1
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
- Conserved Domains (3) summary
-
- cd00116
Location:888 → 1213
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00034
Location:1085 → 1112
- LRR_AMN1; leucine-rich repeat [structural motif]
- pfam05729
Location:513 → 682
- NACHT; NACHT domain
-
XM_011522484.4 → XP_011520786.1 MHC class II transactivator isoform X1
See identical proteins and their annotated locations for XP_011520786.1
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
- Conserved Domains (3) summary
-
- cd00116
Location:888 → 1213
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00034
Location:1085 → 1112
- LRR_AMN1; leucine-rich repeat [structural motif]
- pfam05729
Location:513 → 682
- NACHT; NACHT domain
-
XM_006720880.4 → XP_006720943.2 MHC class II transactivator isoform X1
See identical proteins and their annotated locations for XP_006720943.2
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
- Conserved Domains (3) summary
-
- cd00116
Location:888 → 1213
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00034
Location:1085 → 1112
- LRR_AMN1; leucine-rich repeat [structural motif]
- pfam05729
Location:513 → 682
- NACHT; NACHT domain
-
XM_047434123.1 → XP_047290079.1 MHC class II transactivator isoform X5
- UniProtKB/TrEMBL
-
Q66X48
-
XM_011522486.3 → XP_011520788.1 MHC class II transactivator isoform X2
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
- Conserved Domains (3) summary
-
- cd00116
Location:888 → 1149
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- sd00031
Location:1088 → 1115
- LRR_1; leucine-rich repeat [structural motif]
- pfam05729
Location:513 → 682
- NACHT; NACHT domain
-
XM_011522491.3 → XP_011520793.1 MHC class II transactivator isoform X7
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
- Conserved Domains (2) summary
-
- cd00116
Location:888 → 1119
- LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
- pfam05729
Location:513 → 682
- NACHT; NACHT domain
-
XM_047434115.1 → XP_047290071.1 MHC class II transactivator isoform X4
- UniProtKB/TrEMBL
-
Q66X48
-
XM_047434118.1 → XP_047290074.1 MHC class II transactivator isoform X6
- UniProtKB/TrEMBL
-
Q66X48
-
XM_047434114.1 → XP_047290070.1 MHC class II transactivator isoform X3
- UniProtKB/TrEMBL
-
Q66X48
-
XM_047434120.1 → XP_047290076.1 MHC class II transactivator isoform X8
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
- UniProtKB/TrEMBL
-
A0A087X2I7
-
XM_047434122.1 → XP_047290078.1 MHC class II transactivator isoform X9
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
- UniProtKB/TrEMBL
-
A0A0B4J1S1
-
XM_047434128.1 → XP_047290084.1 MHC class II transactivator isoform X11
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
-
XM_047434126.1 → XP_047290082.1 MHC class II transactivator isoform X10
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
-
XM_047434127.1 → XP_047290083.1 MHC class II transactivator isoform X11
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
-
XM_047434117.1 → XP_047290073.1 MHC class II transactivator isoform X5
- UniProtKB/TrEMBL
-
Q66X48
-
XM_047434116.1 → XP_047290072.1 MHC class II transactivator isoform X5
- UniProtKB/TrEMBL
-
Q66X48
-
XM_047434124.1 → XP_047290080.1 MHC class II transactivator isoform X4
- UniProtKB/TrEMBL
-
Q66X48
-
XM_047434125.1 → XP_047290081.1 MHC class II transactivator isoform X4
- UniProtKB/TrEMBL
-
Q66X48
-
XM_047434119.1 → XP_047290075.1 MHC class II transactivator isoform X3
- UniProtKB/TrEMBL
-
Q66X48
-
XM_011522490.3 → XP_011520792.2 MHC class II transactivator isoform X3
- UniProtKB/TrEMBL
-
Q66X48
RNA
-
XR_001751904.2 RNA Sequence
-
XR_007064880.1 RNA Sequence
-
XR_007064879.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060940.1 Alternate T2T-CHM13v2.0
- Range
-
10902173..10978992
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054380331.1 → XP_054236306.1 MHC class II transactivator isoform X2
- UniProtKB/TrEMBL
-
Q66X48
-
XM_054380339.1 → XP_054236314.1 MHC class II transactivator isoform X7
- UniProtKB/TrEMBL
-
Q66X48
-
XM_054380330.1 → XP_054236305.1 MHC class II transactivator isoform X1
- UniProtKB/TrEMBL
-
Q66X48
-
XM_054380329.1 → XP_054236304.1 MHC class II transactivator isoform X1
- UniProtKB/TrEMBL
-
Q66X48
-
XM_054380328.1 → XP_054236303.1 MHC class II transactivator isoform X1
- UniProtKB/TrEMBL
-
Q66X48
-
XM_054380342.1 → XP_054236317.1 MHC class II transactivator isoform X5
- UniProtKB/TrEMBL
-
Q66X48
-
XM_054380333.1 → XP_054236308.1 MHC class II transactivator isoform X4
- UniProtKB/TrEMBL
-
Q66X48
-
XM_054380336.1 → XP_054236311.1 MHC class II transactivator isoform X6
- UniProtKB/TrEMBL
-
Q66X48
-
XM_054380332.1 → XP_054236307.1 MHC class II transactivator isoform X3
- UniProtKB/TrEMBL
-
Q66X48
-
XM_054380340.1 → XP_054236315.1 MHC class II transactivator isoform X8
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
-
XM_054380341.1 → XP_054236316.1 MHC class II transactivator isoform X9
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
-
XM_054380347.1 → XP_054236322.1 MHC class II transactivator isoform X11
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
-
XM_054380345.1 → XP_054236320.1 MHC class II transactivator isoform X10
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
-
XM_054380346.1 → XP_054236321.1 MHC class II transactivator isoform X11
- UniProtKB/Swiss-Prot
- A0N0N9, D3DUG0, E9PFE0, P33076, Q29675, Q8SNB8, Q96KL4
-
XM_054380335.1 → XP_054236310.1 MHC class II transactivator isoform X5
- UniProtKB/TrEMBL
-
Q66X48
-
XM_054380334.1 → XP_054236309.1 MHC class II transactivator isoform X5
- UniProtKB/TrEMBL
-
Q66X48
-
XM_054380343.1 → XP_054236318.1 MHC class II transactivator isoform X4
- UniProtKB/TrEMBL
-
Q66X48
-
XM_054380344.1 → XP_054236319.1 MHC class II transactivator isoform X4
- UniProtKB/TrEMBL
-
Q66X48
-
XM_054380337.1 → XP_054236312.1 MHC class II transactivator isoform X3
- UniProtKB/TrEMBL
-
Q66X48
-
XM_054380338.1 → XP_054236313.1 MHC class II transactivator isoform X3
- UniProtKB/TrEMBL
-
Q66X48
RNA
-
XR_008489092.1 RNA Sequence
-
XR_008489093.1 RNA Sequence
-
XR_008489091.1 RNA Sequence
-
XR_008489090.1 RNA Sequence