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    LOC4345234 eukaryotic translation initiation factor 3 subunit I [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345234, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4345234
    Gene description
    eukaryotic translation initiation factor 3 subunit I
    Locus tag
    OSNPB_080308100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 38.4), leaves after flowering (RPKM 32.7) and 6 other tissues See more
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    Genomic context

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    See LOC4345234 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (12981656..12988352, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (12906777..12913679, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9268934 Neighboring gene uncharacterized LOC136351518 Neighboring gene small nucleolar RNA U54 Neighboring gene small nucleolar RNA U54 Neighboring gene small nucleolar RNA U54 Neighboring gene phenylalanine ammonia-lyase-like Neighboring gene phenylalanine ammonia-lyase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of eukaryotic translation initiation factor 3 complex, eIF3m IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    eukaryotic translation initiation factor 3 subunit I
    Names
    B1052H09.108
    OSJNBa0061E21.121
    Os08g0308100
    WD domain, G-beta repeat domain-containing protein
    putative TGF-beta receptor-interacting protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      12981656..12988352 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795401.3 → XP_015650887.1  eukaryotic translation initiation factor 3 subunit I isoform X1

      UniProtKB/TrEMBL
      A3BRT1, C8TF49, Q6YS69, Q6YXE9
      Conserved Domains (2) summary
      cd00200
      Location:7 → 314
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:13 → 50
      7WD40; WD40 repeat [structural motif]

    2. XM_026027637.2 → XP_025883422.1  eukaryotic translation initiation factor 3 subunit I isoform X2

      Conserved Domains (2) summary
      cd00200
      Location:7 → 302
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:13 → 49
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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