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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 02, 2014 |
| Title |
Illumina HiSeq 2500 (Oryza sativa Japonica Group) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Oryza sativa Japonica Group |
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| Submission date |
Apr 02, 2014 |
| Last update date |
Jun 05, 2018 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (358)
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GSM1361891, GSM1361892, GSM1361893, GSM1361894, GSM1361895, GSM1361896
GSM1361897, GSM1361898, GSM2038042, GSM2092603, GSM2092604, GSM2092605, GSM2092606, GSM2092607, GSM2092608, GSM2298191, GSM2298194, GSM2362452, GSM2362453, GSM2362454, GSM2362455, GSM2362456, GSM2362457, GSM2362458, GSM2362459, GSM2362460, GSM2362461, GSM2362462, GSM2362463, GSM2362464, GSM2362465, GSM2362466, GSM2362467, GSM2362468, GSM2362469, GSM2362470, GSM2362471, GSM2362472, GSM2362473, GSM2362474, GSM2362475, GSM2362476, GSM2362477, GSM2362478, GSM2362479, GSM2362480, GSM2362481, GSM2362482, GSM2362483, GSM2362484, GSM2362485, GSM2362486, GSM2362487, GSM2402638, GSM2402639, GSM2402640, GSM2402641, GSM2402642, GSM2402643, GSM2402644, GSM2402645, GSM2402646, GSM2402647, GSM2402648, GSM2402649, GSM2402650, GSM2402651, GSM2402652, GSM2402653, GSM2739536, GSM2739537, GSM2739538, GSM2739539, GSM2739540, GSM2739541, GSM2739542, GSM2739543, GSM2739544, GSM2739545, GSM2739546, GSM2739547, GSM2739548, GSM2739549, GSM2739550, GSM2739551, GSM2739552, GSM2739553, GSM2739554, GSM2739555, GSM2739556, GSM2739557, GSM2739558, GSM2739559, GSM2739560, GSM2739561, GSM2739562, GSM2739563, GSM2739564, GSM2739565, GSM2739566, GSM2739567, GSM2739568, GSM2739569, GSM2739570, GSM2739571, GSM2745987, GSM2745988, GSM2745989, GSM2745990, GSM2745991, GSM2745992, GSM2745993, GSM2745994, GSM2881082, GSM2881083, GSM2904723, GSM2904724, GSM2904725, GSM2904726, GSM3072499, GSM3072500, GSM3072501, GSM3072502, GSM3072503, GSM3072504, GSM3176827, GSM3176828, GSM3176829, GSM3176830, GSM3176831, GSM3176832, GSM3231378, GSM3231379, GSM3231380, GSM3231381, GSM3231382, GSM3231383, GSM3231384, GSM3231385, GSM3231386, GSM3231387, GSM3231388, GSM3231389, GSM3231390, GSM3231391, GSM3231392, GSM3231393, GSM3231394, GSM3231395, GSM3231396, GSM3231397, GSM3231398, GSM3759471, GSM3759472, GSM3759473, GSM3759474, GSM3759475, GSM3759476, GSM3759477, GSM3759478, GSM3759479, GSM3759480, GSM3759481, GSM3759482, GSM3759483, GSM3759484, GSM3759485, GSM3759486, GSM3759487, GSM3759488, GSM3763126, GSM3763127, GSM3763128, GSM3763129, GSM3763130, GSM3763131, GSM3769091, GSM3769092, GSM3769093, GSM3769100, GSM3769101, GSM3769102, GSM3926470, GSM3926471, GSM3926472, GSM3926473, GSM3926474, GSM3926475, GSM3926476, GSM3926477, GSM3926478, GSM3926479, GSM3926480, GSM3926481, GSM3926482, GSM3926483, GSM3926484, GSM3926485, GSM4213077, GSM4213078, GSM4239928, GSM4239929, GSM4239930, GSM4659081, GSM4659082, GSM4659084, GSM4659085, GSM4659088, GSM4659090, GSM4659091, GSM4659092, GSM4659093, GSM4659094, GSM4659095, GSM4659096, GSM4659097, GSM4659098, GSM4659101, GSM4659102, GSM4659104, GSM4659106, GSM4659107, GSM4659108, GSM4659110, GSM4659111, GSM4659112, GSM4659113, GSM4659114, GSM4659115, GSM4659116, GSM4659117, GSM5852178, GSM5852179, GSM5852180, GSM5852181, GSM5852182, GSM5852183, GSM5852184, GSM5852185, GSM5852186, GSM5852187, GSM5852188, GSM5852189, GSM5852190, GSM5852191, GSM5852192, GSM5852193, GSM5852194, GSM5852195, GSM5923396, GSM5923397, GSM5923398, GSM5923399, GSM5923400, GSM5923401, GSM5923402, GSM5923403, GSM5923404, GSM5923405, GSM5923406, GSM5923407, GSM6727477, GSM6727478, GSM6727479, GSM6727480, GSM6727481, GSM6727482, GSM6727483, GSM6727484, GSM6727485, GSM6727486, GSM6727487, GSM6727488, GSM6727489, GSM6727490, GSM6727491, GSM6727492, GSM6929610, GSM6929611, GSM6929612, GSM6929613, GSM6929614, GSM6929615, GSM6929616, GSM6929617, GSM6929618, GSM6929619, GSM6929620, GSM6929621, GSM6929622, GSM6929623, GSM6929624, GSM6929625, GSM6929626, GSM6929627, GSM6929628, GSM6929629, GSM6929630, GSM6929631, GSM6929632, GSM6929633, GSM7091073, GSM7091074, GSM7091075, GSM7091076, GSM7091077, GSM7091078, GSM7091079, GSM7091080, GSM7091081, GSM8006633, GSM8006634, GSM8006635, GSM8006636, GSM8006637, GSM8006638, GSM8006639, GSM8006640, GSM8006641, GSM8006642, GSM8006643, GSM8006644, GSM8006645, GSM8006646, GSM8006647, GSM8006648, GSM8006649, GSM8006650, GSM8006651, GSM8006652, GSM8006653, GSM8006654, GSM8006655, GSM8006656, GSM8006657, GSM8006658, GSM8006659, GSM8006660, GSM8006661, GSM8006662, GSM8006663, GSM8006664, GSM8006665, GSM8006666, GSM8006667, GSM8006668, GSM8006669, GSM8006670, GSM8006671, GSM8006672, GSM8006673, GSM8006674, GSM8006675, GSM8006676, GSM8006677, GSM8006678, GSM8006679, GSM8006680
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| Series (31)
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| GSE56463 |
Transcriptome profiling of various organs at different developmental stages in rice (single-end) |
| GSE76798 |
Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in Plants (I) |
| GSE79344 |
Comparative small RNA analysis of pollen development in autotetraploid and diploid rice |
| GSE86215 |
Characterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels |
| GSE89233 |
Fundamental molecular bases for differential transcriptional programs of top leaves during grain-filling in rice |
| GSE90479 |
Analysis of small RNAs revealed differential expressions during the development of pollen and embryo sac and their targets may associate with fertility in autotetraploid rice |
| GSE92444 |
Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in Plants |
| GSE102494 |
mRNA sequencing of whole 15 d old Oryza sativa shoots |
| GSE102747 |
Down-regulated expression of OsDCL3b affects small RNA biogenesis and panicle development in rice |
| GSE103145 |
Identification and analysis of adenine N6-methylation sites in the rice genome |
| GSE107827 |
de novo re-construction of the core genome from ChIP-Seq for large-genome organisms |
| GSE108542 |
Genome-wide profiling of histone lysine crotonylation reveals positive regulation of transcription in rice |
| GSE112547 |
Physiological and genome-wide expression analysis of cold-induced leaf rolling at the seedling stage in rice (Oryza sativa L.) |
| GSE116423 |
Chromosomal deletions drove parallel domestication of plant architecture in Asian and African rice |
| GSE131003 |
Integrated analysis of microRNA and mRNA expression profiles of rice seedlings in response to zinc deficiency and recovery (miRNA-seq) |
| GSE131004 |
Integrated analysis of microRNA and mRNA expression profiles of rice seedlings in response to zinc deficiency and recovery |
| GSE131083 |
The lipid transfer protein OsLTPL159 is involved in cold tolerance at the early seedling stage in rice |
| GSE131319 |
Control of Rice Tillering by RNA-directed DNA Methylation at Miniature Inverted-repeat Transposable Elements |
| GSE133741 |
DNA methylation of a 3' cis-element promotes gene activation |
| GSE141775 |
Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 1] |
| GSE141996 |
Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice |
| GSE142770 |
Genetic selection shaped the gene expression patterns of mRNA and protein in rice subspecies |
| GSE153954 |
RNA-seq analysis of different sub-regions of developing grains in rice |
| GSE195853 |
Transcriptome differences between wild-type and ERF096 transgenic rice before and after cold treatment |
| GSE197599 |
Transcriptome analysis of alternative splicing under ABA exposure in osfkbp20-1b mutant compared to wild-type (ZH11) of rice |
| GSE217841 |
R-loops act as a master regulatory switch modulating transcription of cold-responsive genes in rice |
| GSE222734 |
A DNA adenine demethylase impairs PRC2-mediated repression of genes marked by a specific chromatin signature |
| GSE227072 |
Integrated transcriptomic analysis identifies coordinated responses to nitrogen and phosphate deficiency in rice |
| GSE252767 |
Identification of endogenous small peptides involved in rice immunity through transcriptomics- and proteomics-based screening |
| GSE252768 |
Identification of endogenous small peptides involved in rice immunity through transcriptomics- and proteomics-based screening |
| GSE252769 |
Identification of endogenous small peptides involved in rice immunity through transcriptomics- and proteomics-based screening |
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| Supplementary data files not provided |
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