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| Status |
Public on Mar 16, 2020 |
| Title |
Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice [datatset 1] |
| Organism |
Oryza sativa Japonica Group |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
we emphatically monitored the responsive changes of genes targeted by rice miRNAs miRNAs at 0, 8, 24 hours across Xoo strain PXO86 infection in its compatible rice variety IR24 and incompatible variety IRBB5 by degradome technology.These findings provide new insights into the complex roles of characteristic miRNAs in rice-Xoo interactions.
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| Overall design |
To recognize the post-transcriptional regulatory units caused by miRNAs during rice-Xoo interaction, two mixed degradome libraries, IR24-D(including IR24-0 h, IR24-8 h and IR24-24 h) and IRBB5-D(including IRBB5-0 h, IRBB5-8 h and IRBB5-24 h), were generated, which could provide the valuable experimental target genes validation through detecting the cleavage sites detection of miRNAs.
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| Contributor(s) |
jia y, jiang g, zhai w |
| Citation(s) |
31991765 |
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| Submission date |
Dec 10, 2019 |
| Last update date |
Mar 16, 2020 |
| Contact name |
yanfeng jia |
| E-mail(s) |
yfjia@genetics.ac.cn
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| Organization name |
Institute of genetics and developmental biology, Chinese academy of science
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| Street address |
Beijing Beijing Chaoyang District Beichen West Road
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| City |
Beijing |
| ZIP/Postal code |
100101 |
| Country |
China |
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| Platforms (1) |
| GPL18525 |
Illumina HiSeq 2500 (Oryza sativa Japonica Group) |
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| Samples (2) |
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| This SubSeries is part of SuperSeries: |
| GSE141996 |
Characteristic dissection of Xanthomonas oryzae pv. oryzae responsive microRNAs in rice |
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| Relations |
| BioProject |
PRJNA594662 |
| SRA |
SRP235582 |
