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Platform GPL273 Query DataSets for GPL273
Status Public on Mar 18, 2003
Title UCSF 3OPHs version 1 human long oligo array
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Homo sapiens
 
Description Spotted long oligonucleotide array produced using Operon Human Genome Oligo Set Version 1 probes. This set includes 13971 oligonucleotides (mostly 70-mers) designed based upon representative sequences in build 119 of the human UniGene database. 29 negative control oligos are also included on these arrays.
Keywords = spotted, long oligonucleotide
 
Web link http://arrays.ucsf.edu
Contributor(s) Barczak A, Erle DJ
Submission date Mar 16, 2003
Last update date Jan 18, 2013
Contact name David J Erle
E-mail(s) erle@itsa.ucsf.edu
Phone 415-206-5905
URL http://arrays.ucsf.edu
Organization name University of California San Francisco
Department Medicine
Lab Shared Microarray Facility
Street address Box 0854
City San Francisco
State/province CA
ZIP/Postal code 94143-0854
Country USA
 
Samples (14) GSM4848, GSM4849, GSM4850, GSM4851, GSM4852, GSM4853 
Series (1)
GSE344 Spotted long oligonucleotide arrays

Data table header descriptions
ID
GENE_NAME Descriptive gene name, from UniGene
UNIGENE UniGene cluster ID, Build 155
GENE Entrez GENE ID
GB_ACC GenBank accession number of sequence used to design oligonucleotide probe
GENE_SYMBOL Gene symbol, from UniGene
SEQUENCE Sequence of oligonucleotide probe, provided by Operon
SPOT_ID

Data table
ID GENE_NAME UNIGENE GENE GB_ACC GENE_SYMBOL SEQUENCE SPOT_ID
H000001_01 CASP8 associated protein 2 122843 9994 NM_012115 CASP8AP2 GAGGGCCATCATTTAAAACATTTGCATATTTAGCCGCCAAGTTGGATAAAAATCCAAATCAGGTCTCAGA
H000002_01 tumor suppressing subtransferable candidate 3 154036 7262 AF035444 TSSC3 CTCATCCAGTCATGCGGGGCTGGTGTGAAAGGCGCTGGGAACCGGCTTTGAATGAATAAATGAATCGTGT
H000003_01 PEF protein with a long N-terminal hydrophobic domain (peflin) 241531 23578 AK001420 PEF AATCTGACCAAGCATGAGAGAGATCTGTCTATGGGACCAGTGGCTTGGATTCTGCCACACCCATAAATCC
H000004_01 fumarylacetoacetate hydrolase (fumarylacetoacetase) 73875 2184 M55150 FAH TCCTGCCATCATGAGATTTTCTCTGCTCTTCTGGAAACAAAGGGCTCAAGCACCCCTTTCAACCCTGTGA
H000005_01 AL121964 TCCCTGTGAAACTTTGGTTTCTTTCTATAAATGTGTGTGGTTTTCAGCGCTCAACTCCTGTCTTCAAATG
H000006_01 peroxiredoxin 5 31731 25824 NM_012094 PRDX5 AATATCATCTCACAGCTCTGAGGCCCTGGGCCAGATTACTTCCTCCACCCCTCCCTATCTCACCTGCCCA
H000007_01 programmed cell death 6 80019 10016 AK001917 PDCD6 TGTCACGTGGGGACCCAGCTGTACATATGTGGATAAGCTGATTAATGGTTTTGCAACTGTAATAGTAGCT
H000008_01 v-akt murine thymoma viral oncogene homolog 3 (protein kinase B, gamma) 278582 10000 AF135794 AKT3 CTTTGGGAGAAGAGATGCTGCCATTTAACCCCTTGGTACTGAAAATGAGAAAATCCCCAACTATGCATGC
H000009_01 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 248037 4773 U43342 NFATC2 CTACTTGGATGATGTTAATGAAATTATCAGGAAGGAGTTTTCAGGACCTCCTGCCAGAAATCAGACGTAA
H000010_01 non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase) 72050 8382 AF067724 NME5 TTTCATGCTCATGTGTCAGATATGCTTCCCTCAAACCTTGTTACAGCATCATCACATTACCTGTTTGATG
H000011_01 lamin A/C 77886 4000 M13452 LMNA GAGCCCTTGCCTCCCCATTTCCCATCTGCACCCCTTCTCTCCTCCCCAAATCAATACACTAGTTGTTTCT
H000012_01 calpain 11 225953 11131 AJ242832 CAPN11 TGAACAACAAGGTAATGCAGGTCCTGGTGGCCAGGTATGCAGATGATGACCTGATCATAGACTTTGACAG
H000013_01 cell death-inducing DFFA-like effector a 249129 1149 AF041378 CIDEA AGGACTTCATCGGCTGCCTTAACGTGAAGGCCACCATGTATGAGATGTACTCCGTGTCCTACGACATCCG
H000014_01 programmed cell death 5 166468 9141 AF014955 PDCD5 GAAAAGTAATGGACTCTGATGAAGATGACGATTATTGAACTACAAGTGCTCACAGACTAGAACTTAACGG
H000015_01 dedicator of cyto-kinesis 1 82295 1793 D50857 DOCK1 TGTTCCAGCCGGTGGTGTGACTTCGTTGGTTGAGGTGTGTCTCCAACCTACATCAGACCATGAAGTTCAA
H000016_01 Kruppel-type zinc finger (C2H2) 142150 10224 AB011414 ZK1 TGATACCTGCTGGGTATTGGTTCCAGCACTCCGTGAGCCATGTCCAGTCCCTTTTATAAAATGACATGTT
H000017_01 DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase) 133089 1677 AF064019 DFFB CGGTCTGGAAGGAAACACGCGGATCTGAACAGCAGTAATCCTGGGGGATACGGGGGTTGGGCTAGATTAC
H000018_01 apoptosis inhibitor 5 227913 8539 U83857 API5 TCACCGTTCCCCTTCCCTTTCGTAAGGCAATAGTGCACAACTTAGGTTATTTTTGCTTCCGAATTTGAAT
H000019_01 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) 77196 6709 J05243 SPTAN1 TAGGAGAAAATGGTGCTTCACTAACCCGCTTCCGGTCCAGTCACAATCATCATGTCACTGTGGGACCCAG
H000020_01 apoptosis-associated tyrosine kinase 128316 9625 AB014541 AATK ATGTAAAGTTTATTGTTGCTTCGCAGGGGGATTTGTTTTGTGTTTTGTTTGAGGCTTAGAACGCTGGTGC

Total number of rows: 14001

Table truncated, full table size 1900 Kbytes.






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