GEO help: Mouse over screen elements for information.
Status
Public on Jun 26, 2008
Title
CNIO-CDC Ratónchip 23K v3
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Mus musculus Manufacturer
Spanish National Cancer Research Center
Manufacture protocol
Probes were adquired from the NIA and RICKEN sets of mouse full-lenght cDNAs. Probes were checked by sequencing, aplified by PCR and spotted to the slides
Description
This chip contains both the NIA15K and the 7.4K clone sets from the National Institute on Aging http://lgsun.grc.nia.nih.gov/cDNA/cDNA.html, plus 800 additional clones specifically associated to cancer, angiogenesis, apoptosis, signal transduction and stress processes obtained either from the Fantom1 collection (RIKEN) or the I.M.A.G.E. Consortium (Research Genetics, Huntsville, AL).
Submission date
Mar 17, 2008
Last update date
Jun 26, 2008
Contact name
Marcos Malumbres
E-mail(s)
mmm@cnio.es Organization name
Centro Nacional de Investigaciones Oncológicas (CNIO)
Department
Molecular Oncology
Lab
Cell Division and Cancer
Street address
Melchor Fernandez Almagro 3
City
Madrid
ZIP/Postal code
E-28029
Country
Spain
Samples (20)
GSM275434 , GSM275435 , GSM275436 , GSM275437 , GSM275438 , GSM275439
GSM275440 ,
GSM275441 ,
GSM275442 ,
GSM275443 ,
GSM275444 ,
GSM275445 ,
GSM275446 ,
GSM275447 ,
GSM275448 ,
GSM275449 ,
GSM275450 ,
GSM275451 ,
GSM275452 ,
GSM275453 Series (2)
GSE10859 Expression patterns of cDNAs in gamma-irradiation induced T-cell lymphomas
GSE10861 T-cell lymphoblastic lymphomas induced by gamma-irradiation
Data table header descriptions ID GENE SYMBOL Gene symbols
ORF Ensembl ID ENSEMBL ID
Unigene ID Unigene ID
GB_LIST RefSeq Ids for DNA sequences for that probe
GB_ACC GenBank Id for DNA sequences for that probe
GB LIST GenBank Id for DNA sequences for that probe
Clone ID IMAGE Clone Ids
Description Gene description from Ensembl
Chromosome Mouse chromosome where the gene is located
Start Start position for the gene in the mouse chromosom
End End position for the gene in the mouse chromosome
Strand Strand orientation
SPOT_ID
Data table ID GENE SYMBOL ORF Ensembl ID Unigene ID GB_LIST GB_ACC GB LIST Clone ID Description Chromosome Start End Strand SPOT_ID 0610006I08Rik
0610006I08Rik
66836
ENSMUSG00000010104
Mm.144083
NM_025791.1 CA456882 CA456882,CF585039,DV046859,DV040167,DV051215,DV065167,DV060965,DV040885,CB590472,DV069297,DV039666,DV062185,DV046098,CB588575,CF554190,DV042479,DV039818,BI101839,BU559433,CB601854,CK032545,CB596470,BC066781,BI330237,AK002249,NM_025791,AK003417,AK160470,BY IMAGE:6746754 IMAGE:6430961 DAY20_15_P02 CG02_08_I12 DAY35_02_N22 NEONATAL_24_O03 NEONATAL_05_B02 CG02_13_D20 IMAGE:30290307 UGS01_20_P03 CG02_04_O19 NEONATAL_11_J13 DAY20_13_G03 IMAGE:30287973 IMAGE:30519565 DAY10_09_P07 CG02_06_D07 IMAGE:5040910 IMAGE:6
RIKEN cDNA 0610006I08 gene (0610006I08Rik), mRNA
19
7967544
7969023
1
0610006K04Rik
0610006K04Rik
68323
ENSMUSG00000037349
Mm.49041
NM_026675.1 BY702779 BY702779,AK002252,NM_026675,BC019768,BQ951514,CB205643,CB205199,BQ964695,BI246216,BU937048,BU560148,BG964878,BI904262,CK032007,BI412119,BF181647,BI408969,AW545547,BQ129740,BU758145,AW540079,BE655285,AI158781,C89384,CJ041451,BX523808,AA521851,BY446467,CX12 0610006K04 IMAGE:6475062 IMAGE:30143061 IMAGE:30140644 IMAGE:6508501 IMAGE:5124658 IMAGE:6704893 IMAGE:6589188 IMAGE:4986305 IMAGE:5255127 IMAGE:30789531 IMAGE:5120251 IMAGE:4035588 IMAGE:5121830 C0195A05 IMAGE:5943159 UI-1-CF0-apa-b-09-0-UI C0128C06 UI-M
Nudix (nucleoside diphosphate linked moiety X)-type motif 22 (Nudt22), mRNA
19
6706868
6709886
-1
0610007C02
0610007C02
Mm.370388
AV000244 AV000244 PREDICTED: Mus musculus similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (LOC381391), mRNA
0610007C21Rik
0610007C21Rik
381629
ENSMUSG00000013622
Mm.28144
NM_027855.2 AK158882 AK158882,W15719,BC057097,NM_027855,DV039958,AK151366,AK151307,AK169267,AK002276,DV044562,CF587266,BC049637,NM_212470,CA496847,CA458789,CK128347,AU080019,BU557697,CD364102,CB593616,BG142354,CO041275,BQ748981,CJ226580,BY704095,CO039681,BG695366,CJ154351,AI1 IMAGE:333098 CG02_07_F08 DAY20_01_J12 IMAGE:6436792 IMAGE:30118265 IMAGE:6749552 IMAGE:30790255 MNCb-5090 IMAGE:6585654 IMAGE:30358681 IMAGE:30311057 IMAGE:5643003 IMAGE:5714599 IMAGE:5714599 I920161C17 1110019P11 UI-M-BH2.3-aok-g-02-0-UI IMAGE:4317707 K4
RIKEN cDNA 0610007C21 gene (0610007C21Rik), transcript variant 2, mRNA
5
29507598
29513562
1
0610007H07Rik
0610007H07Rik
68212
ENSMUSG00000020225
Mm.157426
NM_026617.1 BI456334 BI456334,AK039270,AK162942,CF584855,BQ876241,BQ924698,BU523076,BI416214,CB589592,BF788625,CA495156,BI903532,CB588674,CF584854,AK087321,CB589328,BY706298,CB587059,CK793496,CK794544,BI077677,BU961643,BI648137,BU939737,CA468571,DT905718,AK006207,NM_026617,BI IMAGE:5252242 IMAGE:6431084 IMAGE:6392324 IMAGE:6475505 IMAGE:6529704 IMAGE:5145856 IMAGE:30290184 IMAGE:4223689 IMAGE:6776288 IMAGE:5256223 IMAGE:30290193 IMAGE:6431084 IMAGE:30286929 1700021I06 IMAGE:30295079 IMAGE:30847577 IMAGE:30845225 IMAGE:5003781
Transmembrane BAX inhibitor motif containing 4 (Tmbim4), mRNA
10
119786524
119802595
1
0610007L01Rik
0610007L01Rik
71667
ENSMUSG00000053094
Mm.258508
XM_355643 XM_355643,AK171152,BC033455,AK080981,AK090033,AK171607,AK142176,AK039955,AK002297,BF300051,BF682237,DV048161,BY702827,BQ886460,CA977190,BQ899474,DV049850,BG964554,BI684186,BF582768,BF534717,DV048565,BQ952803,BF681833,CF617623,CF551185,BG916588,CX562363,BI IMAGE:4165780 IMAGE:3468736 DAY20_20_F15 0610007L01 IMAGE:6330397 IMAGE:30147940 IMAGE:6392733 DAY35S_07_C10 IMAGE:4986870 IMAGE:5344104 IMAGE:4208518 IMAGE:4187723 DAY35S_01_L12 IMAGE:6395634 IMAGE:3468736 IMAGE:30525140 IMAGE:30527176 IMAGE:4945377 IMAG
RIKEN cDNA 0610007L01 gene, mRNA (cDNA clone MGC:28353 IMAGE:4018584)
5
129392251
129415495
1
0610007P06Rik
0610007P06Rik
67669
ENSMUSG00000062797
Mm.28679
NM_026304.1 AK133534 AK133534,CA461549,BC083330,AK002306,NM_026304,DV048066,CA477812,CB590074,BY711353,AK012166,CA459572,CO801682,CO812145,CX242684,BU560806,BU525804,BF141031,DT914740,AK003324,BY703585,BI409130,BC003916,BI080533,CK780805,AI876458,CD776674,CO038997,BE291504,BG IMAGE:6759489 DAY20_20_A14 IMAGE:6765676 IMAGE:30287636 2610528D16 IMAGE:6750880 IMAGE:30936497 IMAGE:30931910 IMAGE:6590032 IMAGE:6534340 IMAGE:4014027 1110002N09 IMAGE:5116954 IMAGE:5008614 IMAGE:30612466 IMAGE:1924062 UI-M-AQ0-cje-c-04-0-UI UI-M-AH1-ag
RIKEN cDNA 0610007P06 gene, mRNA (cDNA clone MGC:7275 IMAGE:3485003)
7
83909489
83932406
-1
0610007P08Rik
0610007P08Rik
76251
ENSMUSG00000021470
Mm.186610
NM_001013608.1 AK033986 AK033986,XM_484269,AK049874,AK050437,BC075679,NM_001013608,AF217319,AK135037,AK035054,AK002307,BC032964,AK082850,AK006112,BI558699,BQ964206,DV040092,AK039063,BB617764,BB022523,AK021060,BU148612,BF781520,BI143608,BQ892786,BI852688,CV558375,BF142944,CV55557 IMAGE:5294403 IMAGE:6514044 CG02_08_B19 5330411I03 5330411I03 IMAGE:6314824 IMAGE:4222709 IMAGE:5064154 IMAGE:6307931 IMAGE:5389691 IMAGE:30689971 IMAGE:4022525 IMAGE:30694217 IMAGE:3711435 IMAGE:30637870 IMAGE:30650260 IMAGE:30945925 IMAGE:6851087 IMAGE:
RIKEN cDNA 0610007P08 gene, mRNA (cDNA clone MGC:41249 IMAGE:1230345)
13
61198947
61284104
1
0610007P14Rik
0610007P14Rik
58520
ENSMUSG00000021252
Mm.143795
NM_021446.1 AK156525 AK156525,BF233005,AK051673,BU511462,AK004480,AF270646,NM_021446,BC004591,AK002308,AK152230,CB572783,BY704705,DV040438,DV047491,CF617411,BU148398,DV041890,DV062854,CF579761,CB194811,BG245834,BI558063,CB571681,BI854837,CB946503,BF234133,BI145975,CX217413,BF IMAGE:4158870 IMAGE:6506259 IMAGE:30278046 1190004E09 CG02_10_C04 DAY20_18_B20 IMAGE:30526877 IMAGE:6329622 DAY10_05_P01 NEONATAL_13_O17 IMAGE:6434488 IMAGE:30136198 IMAGE:4487049 IMAGE:5293362 IMAGE:30280912 IMAGE:5387760 IMAGE:30317893 IMAGE:4160204 IMA
RIKEN cDNA 0610007P14 gene, mRNA (cDNA clone MGC:8068 IMAGE:3587693)
12
82685023
82694231
-1
0610007P22Rik
0610007P22Rik
68327
ENSMUSG00000047507
Mm.180687
AK122358 AK122358,AK169072,BC022659,BC027751,AK158743,BC089019,AK002309,NM_026676,AK170074,AV024334,BY702844,BI414347,BC038884,CB193780,BU517376,CA979987,CB195879,CB193977,BG869049,BU519543,BI526019,CF950561,CB316577,CF732051,BU847695,AI529368,BI816751,BP762019,BY 1200002G10 0610007P22 IMAGE:5146454 IMAGE:30135057 IMAGE:6514957 IMAGE:30144040 IMAGE:30137587 IMAGE:30134530 IMAGE:4910564 IMAGE:6517381 IMAGE:5058956 IMAGE:30635346 IMAGE:30282246 IMAGE:30551363 IMAGE:6593985 IMAGE:1887502 IMAGE:4162923 mic08024 I920078
RIKEN cDNA 0610007P22 gene, mRNA (cDNA clone MGC:48205 IMAGE:1516275)
17
23048512
23057987
-1
0610008C08Rik
0610008C08Rik
68316
ENSMUSG00000049233
Mm.379156
NM_026673.1 AK029224 AK029224,AK002320,NM_026673,BC016557,AK003831,BY702856,CB182916,BU517599,C88728,CB575993,BU847819,BG861746,BI658505,CB595096,BY704091,AV244357,BB613801,BE288161,AA529563,BM069076,BM069116,BB692580,BM069357,BM069377,AI020181,AI156411,BE333607,AV011823,BB69 0610008C08 IMAGE:30243720 IMAGE:6515199 01B00040GO24 IMAGE:30293110 IMAGE:6594581 IMAGE:4916528 IMAGE:5328031 IMAGE:30301323 1110019O03 4831430B14 4831430B14 IMAGE:3489997 IMAGE:906332 IMAGE:5668583 IMAGE:5668849 7120437F03 IMAGE:5668849 IMAGE:5668583 IMA
RIKEN cDNA 0610008C08 gene (0610008C08Rik), mRNA
13
103634021
103634656
-1
0610009B22Rik
0610009B22Rik
66050
ENSMUSG00000007777
Mm.35693
NM_025319.1 BU946142 BU946142,DV054916,DV039165,BG296923,DV068921,DV053500,DV063968,DV051853,DV043411,DV057408,DV045703,CA980687,DV045176,BI732593,BU935801,CK795306,BY704593,AK002369,NM_025319,BY702906,AK004363,CA463717,BC024353,CA465195,CO802560,CB574050,CX567813,CB574299,CN IMAGE:6740984 DLP01_12_H08 CG02_01_J07 IMAGE:4506202 UGS01_18_M14 DLP01_06_O24 NEONATAL_20_L17 DAY35_05_B08 DAY10_15_H20 MONTH14_03_E13 DAY20_11_F11 IMAGE:30145176 DAY20_08_D23 IMAGE:5362613 IMAGE:6703448 IMAGE:30847778 1110063O03 0610009B22 IMAGE:6771200
RIKEN cDNA 0610009B22 gene, mRNA (cDNA clone MGC:35774 IMAGE:5009365)
11
51438227
51441476
-1
0610009C03Rik
0610009C03Rik
66585
Mm.29606
AK002371 AK002371,NM_025645,BC058365,AK169605,AK004277,AK136135,AK152287,AK152352,BY704518,BY702908,BY761730,DV047094,BY745928,DV056736,CB196072,BU505429,CF584368,CB195548,CF584367,CA977557,BI557076,CO809535,CA465193,CN457117,BI526476,CN455631,BQ748965,CF533234,CF 1110057B21 0610009C03 E430001P12 DAY20_16_M09 E430001P12 MONTH14_01_C08 IMAGE:30137821 IMAGE:6493402 IMAGE:6431401 IMAGE:30137189 IMAGE:6431401 IMAGE:30146813 IMAGE:5291872 IMAGE:30931550 IMAGE:6773159 IMAGE:30656593 IMAGE:5057244 IMAGE:30656072 IMAGE:571
WD repeat domain 57 (U5 snRNP specific) (Wdr57), mRNA
10349636 11042159 11076861 11217851 12466851 12477932 16141072 16141073
0610009D07Rik
0610009D07Rik
66055
ENSMUSG00000037361
Mm.102627
NM_025323.2 AK034275 AK034275,NM_025323,BC019535,DV039795,DV066825,DV060018,DV055087,DV061280,DV067072,DV063449,CB196127,DV042668,DV060137,CB205588,DV052775,DV052491,BG174825,CB590596,CK021634,CB590510,CB202297,BU571215,CK793051,BU938787,BE570608,BI101044,CO801332,BF608814,BI CG02_06_A12 UGS01_06_C05 MONTH14_11_N07 DLP01_13_A21 NEONATAL_08_D03 UGS01_08_A10 NEONATAL_15_P09 IMAGE:30137887 DAY10_12_K03 NEONATAL_01_D11 IMAGE:30143001 DLP01_04_A06 DLP01_02_P19 IMAGE:4458983 IMAGE:30289679 IMAGE:30712521 IMAGE:30290113 IMAGE:3014156
RIKEN cDNA 0610009D07 gene, mRNA (cDNA clone MGC:28726 IMAGE:4458983)
12
3985836
3999612
1
0610009E20Rik
0610009E20Rik
66048
ENSMUSG00000047260
Mm.73608
NM_025318.1 BC022104 BC022104,AK003198,NM_025318,AK002385,AK012769,BY703514,DV039334,DV062819,BY702921,CB575316,BU510762,DV040728,BI218466,BQ957531,CB194128,BI413451,BG916197,BI664799,BF540093,CX225289,BG872296,BF167621,CK791662,BI554655,BI414800,BF683005,BQ176923,BF119610,BM 1110001A14 CG02_02_J10 NEONATAL_13_M14 0610009E20 IMAGE:30291677 IMAGE:6505481 CG02_12_E07 IMAGE:5101119 IMAGE:6439121 IMAGE:30134702 IMAGE:5143734 IMAGE:4937139 IMAGE:5322387 IMAGE:4189590 IMAGE:4922169 IMAGE:3994041 IMAGE:30849166 IMAGE:5289793 IMAGE:51
RIKEN cDNA 0610009E20 gene, mRNA (cDNA clone MGC:35775 IMAGE:5101119)
11
72901192
72902696
-1
0610009F02Rik
0610009F02Rik
76073
ENSMUSG00000024805
Mm.259180
NM_029508.1 AK046682 AK046682,AK040647,AK019998,AK080025,AK146133,AK002387,AK079197,AK017984,NM_029508,AK165489,AK144011,BY717898,DV048882,BG293250,BG295257,BG922883,AI316656,DT909204,CV557857,CX225342,BM933028,CO426164,BB627661,DT914113,BE573932,DT925220,CN843993,DT927475,BB 5830443C21 DAY35S_02_N07 IMAGE:4502956 IMAGE:4504497 IMAGE:4946556 IMAGE:1511584 IMAGE:30691568 UI-M-CG0p-brn-b-05-0-UI IMAGE:30669218 9530023M17 IMAGE:3602037 IMAGE:30917831 9530023M17 mie07025 UI-M-CG0p-bdj-b-01-0-UI IMAGE:30619484 G530123O07 IMAGE:9447
Polycomb group ring finger 5 (Pcgf5), transcript variant 1, mRNA
19
35691125
35798888
1
0610009H04Rik
0610009H04Rik
55978
ENSMUSG00000001105
Mm.358671
NM_018854.3 BC002040 BC002040,DV057615,DV065776,BI413074,DV063541,CF582665,DV063150,DV041205,DV055732,BG244781,DV051412,AI663499,DV049016,CA464655,BU961262,AK139942,BI151145,CK128346,CK794378,BF123760,BI904651,BY702932,NM_018854,AK002397,BI903511,AU066908,BU562177,BF180782,BI MONTH14_03_P01 NEONATAL_27_A04 IMAGE:5146149 NEONATAL_19_E09 IMAGE:6432511 NEONATAL_14_O13 CG02_14_L17 DLP01_15_F12 IMAGE:4484999 DAY35_03_J04 IMAGE:1970813 DAY35S_03_E05 IMAGE:6772466 IMAGE:6741757 IMAGE:5067382 IMAGE:30790256 IMAGE:30845283 IMAGE:402319
RIKEN cDNA 0610009H04 gene, mRNA (cDNA clone MGC:6005 IMAGE:3590790)
11
78262096
78267133
1
0610009J22Rik
0610009J22Rik
71673
ENSMUSG00000003581
Mm.240586
NM_027859.1 AK161195 AK161195,BC103627,AK002414,NM_027859,AK154140,BY702945,CF577610,BQ713646,BQ888817,BQ926909,BQ920215,CB575550,CF577609,CB195552,BQ889191,CA318324,CX203131,BG866913,CX200855,CX202241,CO431631,CB950227,CF952286,BQ442791,BG863935,BE952263,CX208502,CF539061,BG 0610009J22 IMAGE:6433002 IMAGE:6308416 IMAGE:6306468 IMAGE:6397186 IMAGE:6486672 IMAGE:30291292 IMAGE:6433002 IMAGE:30137193 IMAGE:6306344 IMAGE:6813682 IMAGE:4912333 IMAGE:30682869 IMAGE:30308577 IMAGE:30633500 IMAGE:5704678 IMAGE:4918266 UI-M-CD0-ayk-f-
RIKEN cDNA 0610009J22 gene (0610009J22Rik), mRNA
11
4029990
4035960
1
0610009K11Rik
0610009K11Rik
68350
ENSMUSG00000041241
Mm.103413
NM_026689.3 NM_026689 NM_026689,AK076419,AK083295,AK153956,AK170149,BC019516,AK002416,AK044088,BY702947,BF236682,BF580750,BU850500,BQ713924,BI731103,BU519364,BU571257,BI331121,CN527018,CA752095,BI222059,BI737397,BB667671,CB601220,BI652091,BB653879,CO039444,BF142422,BB274684,BB 0610009K11 IMAGE:4163969 IMAGE:4208377 IMAGE:6599380 IMAGE:6309976 IMAGE:5359259 IMAGE:6517175 IMAGE:6623374 IMAGE:5136829 IMAGE:30645887 IMAGE:6832472 IMAGE:5098401 IMAGE:5365431 C730031H18 IMAGE:30312786 IMAGE:5339420 C730031H18 UI-M-BH0-ajr-f-06-0-UI I
RIKEN cDNA 0610009K11 gene (0610009K11Rik), mRNA
4
137315934
137323527
1
0610009M14Rik
0610009M14Rik
78829
ENSMUSG00000029723
Mm.286399
AK143608 AK143608,AK080828,AK079510,AK018735,NM_023910,AK040534,AK154153,BC023761,AK150043,AF201286,AK154490,BC018544,BQ714442,BF158773,BF577954,BF299953,BF584477,BU149050,BU526408,BI411868,BY702951,CB196447,BI411297,DV047168,BI411457,CB587224,BQ932291,BF583517,BI IMAGE:6308363 IMAGE:3982059 IMAGE:4206427 IMAGE:4165585 IMAGE:4218425 IMAGE:6389876 IMAGE:6535282 IMAGE:5121987 0610009M14 IMAGE:30138250 IMAGE:5120082 DAY20_17_A12 IMAGE:5121043 IMAGE:30292262 IMAGE:6392590 IMAGE:4224661 IMAGE:5118856 IMAGE:4239346 IMAGE
TSC22 domain family 4, mRNA (cDNA clone MGC:38340 IMAGE:5343927)
5
136696597
136710348
1
11240 5969 Kbytes .Supplementary data files not provided
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