NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL6979 Query DataSets for GPL6979
Status Public on Jun 23, 2008
Title Illumina HumanHap300v1 Genotyping BeadChip (HumanHap300_(v1.0.0))
Technology type oligonucleotide beads
Distribution commercial
Organism Homo sapiens
Manufacturer Illumina, Inc.
Manufacture protocol See manufacturer's website
Catalog number WG-30-301
 
Description over 317,000 tagSNP markers derived from the International HapMap Project
 
Web link http://icom.illumina.com/Products/ArraysReagents/wgghumanhap300.ilmn
Submission date Jun 20, 2008
Last update date Oct 24, 2011
Organization Illumina Inc.
E-mail(s) expression@illumina.com, techsupport@illumina.com
Phone 1 800 809 4566
URL http://www.illumina.com
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Samples (80) GSM400833, GSM400834, GSM400835, GSM400836, GSM400837, GSM400838 
Series (2)
GSE16019 Profiling of chromosomal alterations in renal cell carcinoma using high-density single nucleotide polymorphism arrays
GSE37906 Analysis of copy number changes and complex rearrangements in patients with congenital abnormalities

Data table header descriptions
ID IlmnID
Name
SNP_ID ncbi SNP accession
IlmnStrand
SNP
AddressA_ID
AlleleA_ProbeSeq
AddressB_ID
AlleleB_ProbeSeq
GenomeBuild
Chr
MapInfo
Ploidy
Species
Source
SourceVersion
SourceStrand
SEQUENCE SourceSeq
TopGenomicSeq
BeadSetId

Data table
ID Name SNP_ID IlmnStrand SNP AddressA_ID AlleleA_ProbeSeq AddressB_ID AlleleB_ProbeSeq GenomeBuild Chr MapInfo Ploidy Species Source SourceVersion SourceStrand SEQUENCE TopGenomicSeq BeadSetId
rs10000092-124_T_R_1136459723 rs10000092 rs10000092 Top [A/G] 4150164 CAAGGTTATGCATAATGCTAATTAGGATCCTAAAGCAGGAAGTAAGGGAA 35 chr4 21571786 2 Homo sapiens dbSNP 124 Bot TGGATTACATCTGAACTGAATTTTCAGTGCTGCTGTGTGCATATTAAATG[T/C]TTCCCTTACTTCCTGCTTTAGGATCCTAATTAGCATTATGCATAACCTTG CAAGGTTATGCATAATGCTAATTAGGATCCTAAAGCAGGAAGTAAGGGAA[G/A]CATTTAATATGCACACAGCAGCACTGAAAATTCAGTTCAGATGTAATCCA 1136666071
rs1000055-124_T_R_1136435416 rs1000055 rs1000055 Top [A/G] 6560400 CCATGCTCGGGACAAGCTCTCCACAAACCATCGTATCATTGGCTAGAACT 35 chr18 44835311 2 Homo sapiens dbSNP 124 Bot AGAGGTCCTACCAGGGACATTTGCTCAAGATTCAGACTCAAGGGGGCTTC[C/T]AGTTCTAGCCAATGATACGATGGTTTGTGGAGAGCTTGTCCCGAGCATGG CCATGCTCGGGACAAGCTCTCCACAAACCATCGTATCATTGGCTAGAACT[A/G]GAAGCCCCCTTGAGTCTGAATCTTGAGCAAATGTCCCTGGTAGGACCTCT 1136666071
rs100016-124_B_R_1136452235 rs100016 rs100016 Bot [T/C] 7570072 TTGACTCTAGATGACACTGAACCTCACGATAGGAAACTTTCAGTGTGAGA 35 chr14 89165198 2 Homo sapiens dbSNP 124 Top TCTCAATCTTTTCAGGGATCAGTTCTTTGCTCTTTGAAACGAGATGATCC[A/G]TCTCACACTGAAAGTTTCCTATCGTGAGGTTCAGTGTCATCTAGAGTCAA TCTCAATCTTTTCAGGGATCAGTTCTTTGCTCTTTGAAACGAGATGATCC[A/G]TCTCACACTGAAAGTTTCCTATCGTGAGGTTCAGTGTCATCTAGAGTCAA 1136666071
rs10003241-124_B_R_1136446541 rs10003241 rs10003241 Bot [T/C] 3180463 AAGCCTATTTAGTCCTAAGTAATTTTACTAAAGATAACCACCATGTATAA 35 chr4 154707619 2 Homo sapiens dbSNP 124 Top TTGCAATTGTAACTTAGAAGTTGGGAAATATTTTCTTATAAAAAAGTATC[G/A]TTATACATGGTGGTTATCTTTAGTAAAATTACTTAGGACTAAATAGGCTT TTGCAATTGTAACTTAGAAGTTGGGAAATATTTTCTTATAAAAAAGTATC[G/A]TTATACATGGTGGTTATCTTTAGTAAAATTACTTAGGACTAAATAGGCTT 1136666071
rs10004197-124_B_R_1136451968 rs10004197 rs10004197 Bot [T/C] 4290274 TTGAATCACTGAAATTTAGTATTAGTTTGAGTGCTAAAACCTCCTGAGGG 35 chr4 121094052 2 Homo sapiens dbSNP 124 Top TTGGAGTTCCTGGAAGTAAAACCATAAAAATGGGGCCCCTCTAAAATTAG[G/A]CCCTCAGGAGGTTTTAGCACTCAAACTAATACTAAATTTCAGTGATTCAA TTGGAGTTCCTGGAAGTAAAACCATAAAAATGGGGCCCCTCTAAAATTAG[G/A]CCCTCAGGAGGTTTTAGCACTCAAACTAATACTAAATTTCAGTGATTCAA 1136666071
rs1000449-124_B_R_1136429511 rs1000449 rs1000449 Bot [T/C] 130397 GGTTAACTCATTCGGCAGCTTATTGTCCATCAGTTGGGTCATTCTTGTCA 35 chr14 70777320 2 Homo sapiens dbSNP 124 Top ATGTGTCATGTCAACACATGACAGAGACTTCAAAGAGAAGAAACAGCCAC[A/G]TGACAAGAATGACCCAACTGATGGACAATAAGCTGCCGAATGAGTTAACC ATGTGTCATGTCAACACATGACAGAGACTTCAAAGAGAAGAAACAGCCAC[A/G]TGACAAGAATGACCCAACTGATGGACAATAAGCTGCCGAATGAGTTAACC 1136666071
rs10007472-124_T_R_1136433739 rs10007472 rs10007472 Top [A/G] 6940692 CCCACCAAAATGTCCAGTTGAAGTATATTTGACAGAATTAACATTCGCTC 35 chr4 77174400 2 Homo sapiens dbSNP 124 Bot TTTGTACCTGGGTAGTTTGGGATCAACCCCAATGGACAACACTAACTTCC[T/C]GAGCGAATGTTAATTCTGTCAAATATACTTCAACTGGACATTTTGGTGGG CCCACCAAAATGTCCAGTTGAAGTATATTTGACAGAATTAACATTCGCTC[G/A]GGAAGTTAGTGTTGTCCATTGGGGTTGATCCCAAACTACCCAGGTACAAA 1136666071
rs1000772-124_B_F_1136429394 rs1000772 rs1000772 Bot [T/C] 7320471 CCTGAAAAACAACAGCCTCTACCCACAGGGCAGGTGAGGATCGGCTGAGA 35 chr3 10646218 2 Homo sapiens dbSNP 124 Bot CCTGAAAAACAACAGCCTCTACCCACAGGGCAGGTGAGGATCGGCTGAGA[C/T]GACGCCTGTGGTCTCCCAAGCACCGGAGAGGCATGTGGCACACGGAAGGC GCCTTCCGTGTGCCACATGCCTCTCCGGTGCTTGGGAGACCACAGGCGTC[A/G]TCTCAGCCGATCCTCACCTGCCCTGTGGGTAGAGGCTGTTGTTTTTCAGG 1136666071
rs10008418-124_B_R_1136434528 rs10008418 rs10008418 Bot [T/C] 4050411 ACCTACTTTCTGGCTTCCAATTCCACATTATCTTGACCAACCTGTGACAA 35 chr4 109090112 2 Homo sapiens dbSNP 124 Top TCATCTGCTCTATAGCAGAGTTTATTGATTGTGAAAATTCTTTAGTTAAA[G/A]TTGTCACAGGTTGGTCAAGATAATGTGGAATTGGAAGCCAGAAAGTAGGT TCATCTGCTCTATAGCAGAGTTTATTGATTGTGAAAATTCTTTAGTTAAA[G/A]TTGTCACAGGTTGGTCAAGATAATGTGGAATTGGAAGCCAGAAAGTAGGT 1136666071
rs1000858-124_B_F_1136439910 rs1000858 rs1000858 Bot [T/C] 1050431 ATATTCAGCTTTCTCAAGATAAAGCTTCCTCTGGGCTTACTGAGATTCCC 35 chr2 127175551 2 Homo sapiens dbSNP 124 Bot ATATTCAGCTTTCTCAAGATAAAGCTTCCTCTGGGCTTACTGAGATTCCC[C/T]AAGTCAGAGTGAGGCCACTCCTTTCTCCAGGGAAGGACCTTTTTTGTTTT AAAACAAAAAAGGTCCTTCCCTGGAGAAAGGAGTGGCCTCACTCTGACTT[A/G]GGGAATCTCAGTAAGCCCAGAGGAAGCTTTATCTTGAGAAAGCTGAATAT 1136666071
rs10008860-124_B_R_1136423819 rs10008860 rs10008860 Bot [T/C] 6960372 CGGTGGCTGAGGTCATACTAACACATGCAGCCAGCACCCACGGGTACAGT 35 chr4 8087665 2 Homo sapiens dbSNP 124 Top CCCTGGAGCTGTGGGGAGGAAGGCGTGGACATAGGTCAGCACTGGCTGTG[G/A]ACTGTACCCGTGGGTGCTGGCTGCATGTGTTAGTATGACCTCAGCCACCG CCCTGGAGCTGTGGGGAGGAAGGCGTGGACATAGGTCAGCACTGGCTGTG[G/A]ACTGTACCCGTGGGTGCTGGCTGCATGTGTTAGTATGACCTCAGCCACCG 1136666071
rs1000940-124_B_F_1136422478 rs1000940 rs1000940 Bot [T/C] 3990112 GGGGAGAAGATGGAGAGATACTCCAATAAGAGGGAATGGATGGCACGCAC 35 chr17 5223976 2 Homo sapiens dbSNP 124 Bot GGGGAGAAGATGGAGAGATACTCCAATAAGAGGGAATGGATGGCACGCAC[C/T]AAAAACACATGCAGCAACAGTGGCATGTTCGGCTGGCCTACAGCACAGCA TGCTGTGCTGTAGGCCAGCCGAACATGCCACTGTTGCTGCATGTGTTTTT[A/G]GTGCGTGCCATCCATTCCCTCTTATTGGAGTATCTCTCCATCTTCTCCCC 1136666071
rs10010359-124_B_F_1136439838 rs10010359 rs10010359 Bot [T/C] 1030632 AACTACAAATTGCCTGTGTGGGCAACAGCAAGGAAAACCAGCAAAATCTG 35 chr4 102011175 2 Homo sapiens dbSNP 124 Bot AACTACAAATTGCCTGTGTGGGCAACAGCAAGGAAAACCAGCAAAATCTG[C/T]ACGGAAAGCTATAGCAGCATGGTAGGGAGAAGCATGGAGGACAAAGGTGG CCACCTTTGTCCTCCATGCTTCTCCCTACCATGCTGCTATAGCTTTCCGT[A/G]CAGATTTTGCTGGTTTTCCTTGCTGTTGCCCACACAGGCAATTTGTAGTT 1136666071
rs1001193-124_B_F_1136455031 rs1001193 rs1001193 Bot [T/C] 360050 GGCAGACTAACACTCTACCAGTATAGGGTCATCACTTCAGAATAATTAAA 35 chr1 144391193 2 Homo sapiens dbSNP 124 Bot GGCAGACTAACACTCTACCAGTATAGGGTCATCACTTCAGAATAATTAAA[C/T]TGAACACTTATTTAGTGCTTACTATGAGCAAAGCACTGATGAAAAGAACG CGTTCTTTTCATCAGTGCTTTGCTCATAGTAAGCACTAAATAAGTGTTCA[A/G]TTTAATTATTCTGAAGTGATGACCCTATACTGGTAGAGTGTTAGTCTGCC 1136666071
rs10012204-124_B_R_1136460071 rs10012204 rs10012204 Bot [T/C] 6400315 CCTCTCTCTCCCCGTTATCCTATATGTTCCTTAAGAACAGAAAATGGGTC 35 chr4 167464155 2 Homo sapiens dbSNP 124 Top CAATTATATCCTAGACACTGTGCAAGGCTTTGAGTATATATAGAATCATA[A/G]GACCCATTTTCTGTTCTTAAGGAACATATAGGATAACGGGGAGAGAGAGG CAATTATATCCTAGACACTGTGCAAGGCTTTGAGTATATATAGAATCATA[A/G]GACCCATTTTCTGTTCTTAAGGAACATATAGGATAACGGGGAGAGAGAGG 1136666071
rs1001452-124_B_F_1136432202 rs1001452 rs1001452 Bot [T/C] 7650114 TTTGGTTAACAGAAATTAAGTATGGTTTCCTTACTTGGGGCTTTGAAGGT 35 chr12 26616940 2 Homo sapiens dbSNP 124 Bot TTTGGTTAACAGAAATTAAGTATGGTTTCCTTACTTGGGGCTTTGAAGGT[C/T]CTTGGTCTGACTTAACCTAAATTTCTAGTTTCATGTTGAAAGTATTGGTG CACCAATACTTTCAACATGAAACTAGAAATTTAGGTTAAGTCAGACCAAG[A/G]ACCTTCAAAGCCCCAAGTAAGGAAACCATACTTAATTTCTGTTAACCAAA 1136666071
rs1001587-124_B_R_1136459000 rs1001587 rs1001587 Bot [T/C] 670176 TCACCTTTATCCTTCACCAAGCTCCAGCTCTCCTTCCTCTTGGGAGGCGC 35 chr22 40994609 2 Homo sapiens dbSNP 124 Top TGTGAGCAGGAATTCCAGGCCTCCCTCTTGGTGTGACTGAGTTAGCAGGC[A/G]GCGCCTCCCAAGAGGAAGGAGAGCTGGAGCTTGGTGAAGGATAAAGGTGA TGTGAGCAGGAATTCCAGGCCTCCCTCTTGGTGTGACTGAGTTAGCAGGC[A/G]GCGCCTCCCAAGAGGAAGGAGAGCTGGAGCTTGGTGAAGGATAAAGGTGA 1136666071
rs1001628-124_T_R_1136430870 rs1001628 rs1001628 Top [A/C] 2490612 AATACTTCAGTATAGATTCTCATATTTTCTCCTTAGATTAGTCATTCAAA 35 chr2 142701879 2 Homo sapiens dbSNP 124 Bot AATGTAGCAAAAATGTCATTTTAAACTATCTGAGGAAAAAATAAATTACA[G/T]TTTGAATGACTAATCTAAGGAGAAAATATGAGAATCTATACTGAAGTATT AATACTTCAGTATAGATTCTCATATTTTCTCCTTAGATTAGTCATTCAAA[A/C]TGTAATTTATTTTTTCCTCAGATAGTTTAAAATGACATTTTTGCTACATT 1136666071
rs10018142-124_B_F_1136435209 rs10018142 rs10018142 Bot [T/C] 780044 GGGCCACGTGTTGGTCAAAACCAGAAGCCTGATGAGATAAGAGTCTTATA 35 chr4 19739332 2 Homo sapiens dbSNP 124 Bot GGGCCACGTGTTGGTCAAAACCAGAAGCCTGATGAGATAAGAGTCTTATA[C/T]ATCCAGCCTCAGGTATCAGAGCAGGACTCGCCCTTTGATTGAGCCAAGAG CTCTTGGCTCAATCAAAGGGCGAGTCCTGCTCTGATACCTGAGGCTGGAT[A/G]TATAAGACTCTTATCTCATCAGGCTTCTGGTTTTGACCAACACGTGGCCC 1136666071
rs10018513-124_T_F_1136444843 rs10018513 rs10018513 Top [A/G] 1090605 GTAAGGATGAAAAGGTCACATTGAGCCATTTGGAGATGAAAATGACATGA 35 chr4 132483876 2 Homo sapiens dbSNP 124 Top GTAAGGATGAAAAGGTCACATTGAGCCATTTGGAGATGAAAATGACATGA[G/A]CATTACGGTGACATGATTCAGACAATCATTCAGAATTTAGAGAAATCTGT GTAAGGATGAAAAGGTCACATTGAGCCATTTGGAGATGAAAATGACATGA[G/A]CATTACGGTGACATGATTCAGACAATCATTCAGAATTTAGAGAAATCTGT 1136666071

Total number of rows: 317503

Table truncated, full table size 130793 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL6979_HumanHap300_v1.0.0.csv.gz 29.6 Mb (ftp)(http) CSV

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap