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Series GSE16019 Query DataSets for GSE16019
Status Public on May 09, 2009
Title Profiling of chromosomal alterations in renal cell carcinoma using high-density single nucleotide polymorphism arrays
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary We applied Illumina’s 317K high-density SNP-arrays to profile chromosomal aberrations in clear cell renal cell carcinoma (ccRCC) from 80 patients and analyzed the association of LOH/amplification events with clinicopathological characteristics
 
Overall design Log_R_Ratio and differece of Allele frequency were calculated by comparing the tumor sample to reference DNA, which is from the peripheral blood of corresponding patient
 
Contributor(s) Chen M, Ye Y, Yang H, Tamboli P, Matin S, Tannir NM, Wood CG, Gu J, Wu X
Citation(s) 19521957
Submission date May 07, 2009
Last update date Mar 21, 2012
Contact name Xifeng Wu
E-mail(s) xwu@mdanderson.org
Phone 7137452485
Fax 7137924657
Organization name UT M.D Anderson Cancer Center
Department Epidemiology
Street address 1155 pressler blvd.
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platforms (2)
GPL6979 Illumina HumanHap300v1 Genotyping BeadChip (HumanHap300_(v1.0.0))
GPL6980 Illumina HumanHap300-Duov2 Genotyping BeadChip (HumanHap300v2_A)
Samples (80)
GSM400833 ccRCC tumor and normal blood DNA pair 1
GSM400834 ccRCC tumor and normal blood DNA pair 2
GSM400835 ccRCC tumor and normal blood DNA pair 3
Relations
BioProject PRJNA115445

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE16019_RAW.tar 63.1 Mb (http)(custom) TAR
Processed data included within Sample table
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