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Series GSE184221 Query DataSets for GSE184221
Status Public on Aug 05, 2023
Title Methylation studies in human blood N94 N68
Platform organisms Homo sapiens; Mus musculus; Rattus norvegicus
Sample organism Homo sapiens
Experiment type Methylation profiling by array
Summary An Infinium microarray platform (GPL28271, HorvathMammalMethylChip40) was used to generate DNA methylation data from human tissue samples.
n=144 EDTA blood samples and n=240 blood samples
 
Overall design Genome annotations of the array can be downloaded from https://github.com/shorvath/MammalianMethylationConsortium. Authors state the following for some samples: I cannot share the idat files, i.e. the raw data. I cannot share the raw data because of issues of IRB/consent forms.
 
Contributor(s) Horvath S, Ritz B
Citation(s) 37493860, 37563227, 38848365
Submission date Sep 15, 2021
Last update date Jun 26, 2024
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platforms (1)
GPL28271 Illumina HorvathMammalianMethylChip40 BeadChip
Samples (384)
GSM5581529 Sample1.Human.205600840003_R01C01
GSM5581530 Sample2.Human.205600840003_R02C01
GSM5581531 Sample3.Human.205600840003_R03C01
Relations
BioProject PRJNA763599

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE184221_Explanation_of_characteristic_variables.docx.gz 12.6 Kb (ftp)(http) DOCX
GSE184221_RAW.tar 40.1 Mb (http)(custom) TAR (of IDAT)
GSE184221_README.docx 12.7 Kb (ftp)(http) DOCX
GSE184221_datBetaNormalized.csv.gz 41.7 Mb (ftp)(http) CSV
GSE184221_n240_Explanation_of_characteristic_variables.docx.gz 12.6 Kb (ftp)(http) DOCX
GSE184221_n240_README.docx 12.9 Kb (ftp)(http) DOCX
GSE184221_n240_datBetaNormalized.csv.gz 41.7 Mb (ftp)(http) CSV
Processed data are available on Series record
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