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Platform GPL28271 Query DataSets for GPL28271
Status Public on Jul 02, 2020
Title Illumina HorvathMammalianMethylChip40 BeadChip
Technology type oligonucleotide beads
Distribution custom-commercial
Organisms Homo sapiens; Mus musculus; Rattus norvegicus
Manufacturer Illumina, Inc.
Manufacture protocol See manufacturer's website
 
Description Developed in the labs of Steve Horvath and Jason Ernst. The mammalian array platform applies to ALL mammals (humans, mouse, rat, sheep, horses, pigs, etc.).
The array design is similar to the Illumina Infinium 450K array but it contains fewer up to 37492 CpGs.
Additional material can be found on the Github page https://github.com/shorvath/MammalianMethylationConsortium/
A vignette on using the mammal methylation array with SeSAMe is available from https://bioconductor.org/packages/release/bioc/vignettes/sesame/inst/doc/mammal.html.
 
Web link https://www.biorxiv.org/content/10.1101/2021.01.07.425637v2
Contributor(s) Horvath S, Ernst J, Arneson A
Submission date Mar 15, 2020
Last update date Aug 16, 2021
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Samples (22190) GSM4411953, GSM4411954, GSM4411955, GSM4411956, GSM4411957, GSM4411958 
Series (45)
GSE147002 DNA methylation profiles from a mouse model of Huntington's disease
GSE147003 DNA methylation profiles from a transgenic sheep model of Huntington's disease
GSE147004 DNA Methylation Study of Huntington's Disease and Motor Progression in Three Species

Data table header descriptions
ID Illumina target ID (IlmnID)
Human.MAPINFO Illumina mapinfo location for humans
Human.CHR Human chromosome
Human.Strand Human strand
Design_Sequence Design sequence for the CpG
Forward_Sequence Forward sequence for the CpG
Top_Sequence Top sequence for the CpG
SourceSeq Source sequence
Infinium_Design_Type Infinium design type (probe type). Type I versus Type II probe.
Human.Hg19_CGstart
Human.Hg19_CGend
Human.Hg19_seqnames
Human.Hg19_SYMBOL
Human.Hg19_main_Categories
Human.Hg38_start
Human.Hg38_end
Human.Hg38_seqnames
Human.Hg38_SYMBOL
Human.Hg38_main_Categories
Mouse.GRCm38.100_CGstart
Mouse.GRCm38.100_CGend
Mouse.GRCm38.100_seqnames
Mouse.GRCm38.100_SYMBOL
Mouse.GRCm38.100_main_Categories
Rat.Rnor.6.0.101_CGstart
Rat.Rnor.6.0.101_CGend
Rat.Rnor.6.0.101_seqnames
Rat.Rnor.6.0.101_SYMBOL
Rat.Rnor.6.0.101_main_Categories
Horse.EquCab3.0.100_CGstart
Horse.EquCab3.0.100_CGend
Horse.EquCab3.0.100_seqnames
Horse.EquCab3.0.100_SYMBOL
Horse.EquCab3.0.100_main_Categories
Pig.Sscrofa11.1.100_CGstart
Pig.Sscrofa11.1.100_CGend
Pig.Sscrofa11.1.100_seqnames
Pig.Sscrofa11.1.100_SYMBOL
Pig.Sscrofa11.1.100_main_Categories
Cat.FC.9.0.100_CGstart
Cat.FC.9.0.100_CGend
Cat.FC.9.0.100_seqnames
Cat.FC.9.0.100_SYMBOL
Cat.FC.9.0.100_main_Categories
Dog.CanFam3.1_CGstart
Dog.CanFam3.1_CGend
Dog.CanFam3.1_seqnames
Dog.CanFam3.1_SYMBOL
Dog.CanFam3.1_main_Categories
Dolphine.turTru1.100_CGstart
Dolphine.turTru1.100_CGend
Dolphine.turTru1.100_seqnames
Dolphine.turTru1.100_SYMBOL
Dolphine.turTru1.100_main_Categories
Elephant.loxAfr3.100_CGstart
Elephant.loxAfr3.100_CGend
Elephant.loxAfr3.100_seqnames
Elephant.loxAfr3.100_SYMBOL
Elephant.loxAfr3.100_main_Categories
Cattle.ARS.UCD1.2_CGstart
Cattle.ARS.UCD1.2_CGend
Cattle.ARS.UCD1.2_seqnames
Cattle.ARS.UCD1.2_SYMBOL
Cattle.ARS.UCD1.2_main_Categories
SPOT_ID

Data table
ID Human.MAPINFO Human.CHR Human.Strand Design_Sequence Forward_Sequence Top_Sequence SourceSeq Infinium_Design_Type Human.Hg19_CGstart Human.Hg19_CGend Human.Hg19_seqnames Human.Hg19_SYMBOL Human.Hg19_main_Categories Human.Hg38_start Human.Hg38_end Human.Hg38_seqnames Human.Hg38_SYMBOL Human.Hg38_main_Categories Mouse.GRCm38.100_CGstart Mouse.GRCm38.100_CGend Mouse.GRCm38.100_seqnames Mouse.GRCm38.100_SYMBOL Mouse.GRCm38.100_main_Categories Rat.Rnor.6.0.101_CGstart Rat.Rnor.6.0.101_CGend Rat.Rnor.6.0.101_seqnames Rat.Rnor.6.0.101_SYMBOL Rat.Rnor.6.0.101_main_Categories Horse.EquCab3.0.100_CGstart Horse.EquCab3.0.100_CGend Horse.EquCab3.0.100_seqnames Horse.EquCab3.0.100_SYMBOL Horse.EquCab3.0.100_main_Categories Pig.Sscrofa11.1.100_CGstart Pig.Sscrofa11.1.100_CGend Pig.Sscrofa11.1.100_seqnames Pig.Sscrofa11.1.100_SYMBOL Pig.Sscrofa11.1.100_main_Categories Cat.FC.9.0.100_CGstart Cat.FC.9.0.100_CGend Cat.FC.9.0.100_seqnames Cat.FC.9.0.100_SYMBOL Cat.FC.9.0.100_main_Categories Dog.CanFam3.1_CGstart Dog.CanFam3.1_CGend Dog.CanFam3.1_seqnames Dog.CanFam3.1_SYMBOL Dog.CanFam3.1_main_Categories Dolphine.turTru1.100_CGstart Dolphine.turTru1.100_CGend Dolphine.turTru1.100_seqnames Dolphine.turTru1.100_SYMBOL Dolphine.turTru1.100_main_Categories Elephant.loxAfr3.100_CGstart Elephant.loxAfr3.100_CGend Elephant.loxAfr3.100_seqnames Elephant.loxAfr3.100_SYMBOL Elephant.loxAfr3.100_main_Categories Cattle.ARS.UCD1.2_CGstart Cattle.ARS.UCD1.2_CGend Cattle.ARS.UCD1.2_seqnames Cattle.ARS.UCD1.2_SYMBOL Cattle.ARS.UCD1.2_main_Categories SPOT_ID
cg00000165 91194674 chr1 R CATTTCAAAAGGGCAAAAGTCTTGGTCGTGAGCGTTCGGCCCCGGAGTCCATGCCACGGG[CG]ATGTGTGCCTCAGCTGTTCCATCAAAAGCCACTGTACTAACAGATCCTGACTGCACTTAG CTAAGTGCAGTCAGGATCTGTTAGTACAGTGGCTTTTGATGGAACAGCTGAGGCACACAT[CG]CCCGTGGCATGGACTCCGGGGCCGAACGCTCACGACCAAGACTTTTGCCCTTTTGAAATG CTAAGTGCAGTCAGGATCTGTTAGTACAGTGGCTTTTGATGGAACAGCTGAGGCACACAT[CG]CCCGTGGCATGGACTCCGGGGCCGAACGCTCACGACCAAGACTTTTGCCCTTTTGAAATG AGGATCTGTTAGTACAGTGGCTTTTGATGGAACAGCTGAGGCACACATCG II 91194674 91194675 chr1 BARHL2 Intergenic_upstream 90729117 90729118 chr1 BARHL2 Intergenic_upstream NA NA NA NA NA 4348628 4348629 14 Barhl2 Intergenic_upstream 70662928 70662929 5 BARHL2 Intron 126018939 126018940 4 BARHL2 Promoter 77292873 77292874 C1 BARHL2 Intergenic_upstream 57959408 57959409 6 BARHL2 Intergenic_upstream 75712 75713 scaffold_98741 BARHL2 Intergenic_upstream 11412983 11412984 scaffold_60 BARHL2 Intergenic_upstream 52520158 52520159 3 BARHL2 Intergenic_upstream cg00000165
cg00001209 61220029 chr5 F TTTATCTTAGGAATTAATACATTCTGCCATTTTCTATTCTGGCTACAATCTAGAGAAATC[CG]TGAGGCTGAATACATTTTGTACCACTTTGTTCTGCTTATAATGTTAAGATGTTTTCAAGA TTTATCTTAGGAATTAATACATTCTGCCATTTTCTATTCTGGCTACAATCTAGAGAAATC[CG]TGAGGCTGAATACATTTTGTACCACTTTGTTCTGCTTATAATGTTAAGATGTTTTCAAGA TCTTGAAAACATCTTAACATTATAAGCAGAACAAAGTGGTACAAAATGTATTCAGCCTCA[CG]GATTTCTCTAGATTGTAGCCAGAATAGAAAATGGCAGAATGTATTAATTCCTAAGATAAA CTTAACATTATAAGCAGAACAAAGTGGTACAAAATGTATTCAGCCTCACG II 61220029 61220030 chr5 C5orf64 Intergenic_downstream 61924202 61924203 chr5 C5orf64-AS1 Intron 107337192 107337193 13 Gm2736 Intergenic_upstream 38574361 38574362 2 RGD1564606 Intergenic_downstream 11958495 11958496 21 KIF2A Intron 40684563 40684564 16 KIF2A Intergenic_upstream 131883869 131883870 A1 KIF2A Intergenic_upstream 48380548 48380549 2 KIF2A Intergenic_upstream NA NA NA NA NA 64819638 64819639 scaffold_7 KIF2A Intergenic_upstream 17450440 17450441 20 KIF2A Intergenic_upstream cg00001209
cg00001364 214170376 chr1 R TGCCCCTTAATGCCACACTGGGGGAATGGCTCATACCCCGAATTATATTCTCAACCCGGG[CG]CGCTTTGCTCTCAGGTGCTCATCACATAAGCGATCCATATCAAACTGGCTCATAGTAGGC GCCTACTATGAGCCAGTTTGATATGGATCGCTTATGTGATGAGCACCTGAGAGCAAAGCG[CG]CCCGGGTTGAGAATATAATTCGGGGTATGAGCCATTCCCCCAGTGTGGCATTAAGGGGCA GCCTACTATGAGCCAGTTTGATATGGATCGCTTATGTGATGAGCACCTGAGAGCAAAGCG[CG]CCCGGGTTGAGAATATAATTCGGGGTATGAGCCATTCCCCCAGTGTGGCATTAAGGGGCA CCAGTTTGATATGGATCGCTTATGTGATGAGCACCTGAGAGCAAAGCGCG II 214170376 214170377 chr1 PROX1 Exon 213997033 213997034 chr1 PROX1 Exon 190161748 190161749 1 Prox1 Exon 108391779 108391780 13 Prox1 Exon 22129005 22129006 5 PROX1 Exon 129572075 129572076 9 PROX1 Exon 31678384 31678385 F1 PROX1 Exon 12005293 12005294 7 PROX1 Exon 366695 366696 scaffold_109953 PROX1 Exon 1266053 1266054 scaffold_74 PROX1 Exon 69576644 69576645 16 PROX1 Exon cg00001364
cg00001582 80828702 chr10 R CAGACAGTGAAAAGGAACTCGGCGTTAGGGGGTGAGTAAGTGAATCAACTCGCCCGGAGC[CG]AGCAAGTTGAAGTGTCAGATTACATTGGCTATTCTATTTCCAAAGGGCCCCGCGCCGCCG CGGCGGCGCGGGGCCCTTTGGAAATAGAATAGCCAATGTAATCTGACACTTCAACTTGCT[CG]GCTCCGGGCGAGTTGATTCACTTACTCACCCCCTAACGCCGAGTTCCTTTTCACTGTCTG CGGCGGCGCGGGGCCCTTTGGAAATAGAATAGCCAATGTAATCTGACACTTCAACTTGCT[CG]GCTCCGGGCGAGTTGATTCACTTACTCACCCCCTAACGCCGAGTTCCTTTTCACTGTCTG GCCCTTTGGAAATAGAATAGCCAATGTAATCTGACACTTCAACTTGCTCG II 80828702 80828703 chr10 ZMIZ1 Promoter 79068945 79068946 chr10 ZMIZ1 Promoter 25459229 25459230 14 Zmiz1 fiveUTR 1749197 1749198 16 Zmiz1 fiveUTR 66604091 66604092 1 ZMIZ1 Intron 81407175 81407176 14 ZMIZ1 Intron 41104169 41104170 D2 ZMIZ1 Intergenic_upstream 28807190 28807191 4 ZMIZ1 Intergenic_upstream NA NA NA NA NA NA NA NA NA NA 34702943 34702944 28 ZMIZ1 Intergenic_upstream cg00001582
cg00002920 130336474 chr10 R AATGCAGCTTGCGCCAGCCACATCTGTGTCTTCCTCTTCTGCCCTCCAAATGAGCCACGC[CG]AGGCAGGGAAGCTGTTGACAAATTAATACTTTAAGAAAATAAACTATGGTCATGTTCAAC GTTGAACATGACCATAGTTTATTTTCTTAAAGTATTAATTTGTCAACAGCTTCCCTGCCT[CG]GCGTGGCTCATTTGGAGGGCAGAAGAGGAAGACACAGATGTGGCTGGCGCAAGCTGCATT GTTGAACATGACCATAGTTTATTTTCTTAAAGTATTAATTTGTCAACAGCTTCCCTGCCT[CG]GCGTGGCTCATTTGGAGGGCAGAAGAGGAAGACACAGATGTGGCTGGCGCAAGCTGCATT CATAGTTTATTTTCTTAAAGTATTAATTTGTCAACAGCTTCCCTGCCTCG II 130336474 130336475 chr10 MKI67 Intergenic_upstream 128538210 128538211 chr10 LINC01163 Intergenic_downstream 136057382 136057383 7 Gm9341 Intergenic_downstream NA NA NA NA NA 4965237 4965238 1 MKI67 Intergenic_upstream 137626929 137626930 14 PTPRE Intergenic_downstream NA NA NA NA NA 37277271 37277272 28 MKI67 Intergenic_upstream NA NA NA NA NA NA NA NA NA NA 47915351 47915352 26 MKI67 Intergenic_upstream cg00002920
cg00003994 15725862 chr7 R TATGTCTTACCCCGAGCTCTCTACTTCTTCCTCATCTTGCATAATCGCGGGATACCCCAA[CG]AAGAGGGCATGTTTGCCAGCCAGCATCACAGGGGGCACCACCACCACCACCACCACCACC GGTGGTGGTGGTGGTGGTGGTGGTGCCCCCTGTGATGCTGGCTGGCAAACATGCCCTCTT[CG]TTGGGGTATCCCGCGATTATGCAAGATGAGGAAGAAGTAGAGAGCTCGGGGTAAGACATA GGTGGTGGTGGTGGTGGTGGTGGTGCCCCCTGTGATGCTGGCTGGCAAACATGCCCTCTT[CG]TTGGGGTATCCCGCGATTATGCAAGATGAGGAAGAAGTAGAGAGCTCGGGGTAAGACATA GGTGGTGGTGGTGCCCCCTGTGATGCTGGCTGGCAAACATGCCCTCTTCG II 15725862 15725863 chr7 MEOX2 Exon 15686237 15686238 chr7 MEOX2 Exon 37108995 37108996 12 Meox2 Exon NA NA NA NA NA NA NA NA NA NA 85009771 85009772 9 MEOX2 Exon 110232429 110232430 A2 AGMO Exon 30323833 30323834 14 AGMO Exon 100073 100074 scaffold_113192 MEOX2 Exon 43078275 43078276 scaffold_5 MEOX2 Exon 24074737 24074738 4 MEOX2 Exon cg00003994
cg00004555 9441696 chr3 R CTTAGTCCTGAAGCAGCCATCGCCTAAGTGCTGCTCCCTGCAGCCAGCAGCATTAATGGA[CG]CTGCACTGCTGTCCTTCCCTGGAGACAGCAGCCAGCACTACTCAAGCTTCTCACGTAGCA TGCTACGTGAGAAGCTTGAGTAGTGCTGGCTGCTGTCTCCAGGGAAGGACAGCAGTGCAG[CG]TCCATTAATGCTGCTGGCTGCAGGGAGCAGCACTTAGGCGATGGCTGCTTCAGGACTAAG CTTAGTCCTGAAGCAGCCATCGCCTAAGTGCTGCTCCCTGCAGCCAGCAGCATTAATGGA[CG]CTGCACTGCTGTCCTTCCCTGGAGACAGCAGCCAGCACTACTCAAGCTTCTCACGTAGCA CGCTGCACTGCTGTCCTTCCCTGGAGACAGCAGCCAGCACTACTCAAGCT II 9441696 9441697 chr3 SETD5 Intron 9400012 9400013 chr3 SETD5 Intron 113079710 113079711 6 Setd5 Intron 145019906 145019907 4 Setd5 Intron 8818814 8818815 16 SETD5 Intergenic_upstream 65762351 65762352 13 SETD5 Intron 50770587 50770588 A2 SETD5 Intron 8763626 8763627 20 SETD5 Intergenic_upstream 322939 322940 GeneScaffold_3269 SETD5 Intergenic_upstream 37488099 37488100 scaffold_12 SETD5 Intergenic_upstream 17207236 17207237 22 SETD5 Intergenic_upstream cg00004555
cg00005112 69958840 chr16 F GGTTGGGGGGGACGCCGAGGTGGAGGGAGGAGGGCCGGGCCCCAGCCAGGAAGCTCTGGG[CG]TGGGCAGGGCTTGTGGGAATGATTTCATTGGAAAGGCCTGCGATATTTTTTCCCCTCCTG GGTTGGGGGGGACGCCGAGGTGGAGGGAGGAGGGCCGGGCCCCAGCCAGGAAGCTCTGGG[CG]TGGGCAGGGCTTGTGGGAATGATTTCATTGGAAAGGCCTGCGATATTTTTTCCCCTCCTG CAGGAGGGGAAAAAATATCGCAGGCCTTTCCAATGAAATCATTCCCACAAGCCCTGCCCA[CG]CCCAGAGCTTCCTGGCTGGGGCCCGGCCCTCCTCCCTCCACCTCGGCGTCCCCCCCAACC AAATATCGCAGGCCTTTCCAATGAAATCATTCCCACAAGCCCTGCCCACG II 69958840 69958841 chr16 WWP2 Intron 69924937 69924938 chr16 WWP2 Intron 107544964 107544965 8 Wwp2 fiveUTR 39602642 39602643 19 Wwp2 Intron 20594598 20594599 3 WWP2 Intron 17084736 17084737 6 WWP2 Intron 47289919 47289920 E2 WWP2 Intron 79821063 79821064 5 WWP2 Intron 134124 134125 GeneScaffold_3381 WWP2 Intron 11181392 11181393 scaffold_48 WWP2 Intron 36954854 36954855 18 WWP2 Intron cg00005112
cg00005271 47753780 chr11 R TCCAGAGTGTTGCACGGAGTAGGGCGGGCTTGGGGGTTAAGCGCATGCGAGAGCTCTGTG[CG]CTTTACAGGACCTCTGGAAGCAACTACTCCTGATTAACCTCGGTGAAGTTAAGGAAAACT AGTTTTCCTTAACTTCACCGAGGTTAATCAGGAGTAGTTGCTTCCAGAGGTCCTGTAAAG[CG]CACAGAGCTCTCGCATGCGCTTAACCCCCAAGCCCGCCCTACTCCGTGCAACACTCTGGA AGTTTTCCTTAACTTCACCGAGGTTAATCAGGAGTAGTTGCTTCCAGAGGTCCTGTAAAG[CG]CACAGAGCTCTCGCATGCGCTTAACCCCCAAGCCCGCCCTACTCCGTGCAACACTCTGGA CTTCACCGAGGTTAATCAGGAGTAGTTGCTTCCAGAGGTCCTGTAAAGCG II 47753780 47753781 chr11 FNBP4 Exon 47732180 47732229 chr11 FNBP4 Exon 90767843 90767844 2 Fnbp4 Exon 79597447 79597448 3 Fnbp4 Intron 12127766 12127767 12 FNBP4 Intron 14914485 14914486 2 FNBP4 Intron 101673339 101673340 D1 FNBP4 Intron 41937678 41937679 18 FNBP4 Intron 73377 73378 GeneScaffold_2458 FNBP4 Intron 1804894 1804895 scaffold_21 FNBP4 Intron 77499228 77499229 15 FNBP4 Intron cg00005271
cg00006213 35646820 chr1 R TAGTGGCCTGCTACATAACTGCATTTAGCCAGCATTTCTGCAGTGCGTAACTGTGAGGAA[CG]TAGTACCGCAAATGGCAATGGACATTAGGACCCGGATGTAGTATTCCTGCTTGCTCCAAG CTTGGAGCAAGCAGGAATACTACATCCGGGTCCTAATGTCCATTGCCATTTGCGGTACTA[CG]TTCCTCACAGTTACGCACTGCAGAAATGCTGGCTAAATGCAGTTATGTAGCAGGCCACTA CTTGGAGCAAGCAGGAATACTACATCCGGGTCCTAATGTCCATTGCCATTTGCGGTACTA[CG]TTCCTCACAGTTACGCACTGCAGAAATGCTGGCTAAATGCAGTTATGTAGCAGGCCACTA AGGAATACTACATCCGGGTCCTAATGTCCATTGCCATTTGCGGTACTACG II 35646820 35646821 chr1 SFPQ Intergenic_downstream 35181219 35181220 chr1 SFPQ Exon 127032720 127032721 4 Sfpq Intron 145090944 145090945 5 Sfpq Intergenic_downstream 22127082 22127083 2 SFPQ Intron 91397875 91397876 6 SFPQ Intron 27062520 27062521 C1 SFPQ Intron 6890933 6890934 15 SFPQ Intergenic_downstream NA NA NA NA NA 14191845 14191846 scaffold_34 SFPQ Intergenic_downstream 110568256 110568257 3 SFPQ Intron cg00006213
cg00008998 144443484 chr2 R TCTTTTCCAGCTAACATAATTTTTTTTTTAAAGTAAACATCAGCTTCTCAAGAGAGATTT[CG]ATTTGAAGACTGTTTATTATATCATTTGAATAGGACTAGACCTGGCCTTTTGACTTTGAA TTCAAAGTCAAAAGGCCAGGTCTAGTCCTATTCAAATGATATAATAAACAGTCTTCAAAT[CG]AAATCTCTCTTGAGAAGCTGATGTTTACTTTAAAAAAAAAATTATGTTAGCTGGAAAAGA TTCAAAGTCAAAAGGCCAGGTCTAGTCCTATTCAAATGATATAATAAACAGTCTTCAAAT[CG]AAATCTCTCTTGAGAAGCTGATGTTTACTTTAAAAAAAAAATTATGTTAGCTGGAAAAGA AGGCCAGGTCTAGTCCTATTCAAATGATATAATAAACAGTCTTCAAATCG II 144443484 144443485 chr2 ARHGAP15 Intron 143685915 143685916 chr2 ARHGAP15 Intron NA NA NA NA NA NA NA NA NA NA 26727904 26727905 18 ARHGAP15 Intron 8269740 8269741 15 ARHGAP15 Intron 137175869 137175870 C1 ARHGAP15 Intron 45738195 45738196 19 ARHGAP15 Intron 789104 789105 GeneScaffold_926 ARHGAP15 Intron NA NA NA NA NA 53045960 53045961 2 ARHGAP15 Intron cg00008998
cg00009248 44087711 chr17 R TCACACTGCCGCCTCCCGGGACGTGTTTGATATTATCCTTTGAGCCACACTTGGACTGGA[CG]TTGCTAAGATCCAGCTTCTTATTAATTATCTGCACCTTTGGTAGCCAGAAAAAAGGATGA TCATCCTTTTTTCTGGCTACCAAAGGTGCAGATAATTAATAAGAAGCTGGATCTTAGCAA[CG]TCCAGTCCAAGTGTGGCTCAAAGGATAATATCAAACACGTCCCGGGAGGCGGCAGTGTGA TCATCCTTTTTTCTGGCTACCAAAGGTGCAGATAATTAATAAGAAGCTGGATCTTAGCAA[CG]TCCAGTCCAAGTGTGGCTCAAAGGATAATATCAAACACGTCCCGGGAGGCGGCAGTGTGA CTGGCTACCAAAGGTGCAGATAATTAATAAGAAGCTGGATCTTAGCAACG II 44087711 44087712 chr17 MAPT Exon 46010297 46010346 chr17 MAPT Exon 104318192 104318193 11 Mapt Exon 92374198 92374199 10 Mapt Exon 17640689 17640690 11 MAPT Exon 17112263 17112264 12 MAPT Exon 46093961 46093962 E1 MAPT Exon 9581006 9581007 9 MAPT Exon 318836 318837 GeneScaffold_2739 MAPT Exon 27421915 27421916 scaffold_31 MAPT Exon 45993499 45993500 19 MAPT Exon cg00009248
cg00009319 70096026 chr7 F TTTTTTTTGAGCGTACTTTAATGAAGAAGATAAAGCGGCCCGGCTGGTGTCCCACAGGCT[CG]GCGCAGTAAGTTCAGATTATTGCTCAGTCTGTCAGAATGGGCTGCTTCCCTCAGCAGCAG TTTTTTTTGAGCGTACTTTAATGAAGAAGATAAAGCGGCCCGGCTGGTGTCCCACAGGCT[CG]GCGCAGTAAGTTCAGATTATTGCTCAGTCTGTCAGAATGGGCTGCTTCCCTCAGCAGCAG TTTTTTTTGAGCGTACTTTAATGAAGAAGATAAAGCGGCCCGGCTGGTGTCCCACAGGCT[CG]GCGCAGTAAGTTCAGATTATTGCTCAGTCTGTCAGAATGGGCTGCTTCCCTCAGCAGCAG CGGCGCAGTAAGTTCAGATTATTGCTCAGTCTGTCAGAATGGGCTGCTTC II 70096026 70096027 chr7 AUTS2 Intron 70631040 70631041 chr7 AUTS2 Intron NA NA NA NA NA NA NA NA NA NA 16516491 16516492 13 AUTS2 Intron 14637435 14637436 3 AUTS2 Intron 13879325 13879326 E3 AUTS2 Intron 2893111 2893112 6 AUTS2 Intron NA NA NA NA NA 13154044 13154045 scaffold_45 AUTS2 Intergenic_upstream 29952107 29952108 25 AUTS2 Intergenic_upstream cg00009319
cg00010445 14089630 chr19 R CCTGCCGCAGCAGAAAGTGGTCTTCGAGCCACTGTCCCGGCTCCCGGCCCGAGCCAGCCC[CG]ACCAGAGGGTCAGGATCCAGAGAATCCCCCAGGTGCTAGTGTTCGGCACGGCCGCCACGG CCGTGGCGGCCGTGCCGAACACTAGCACCTGGGGGATTCTCTGGATCCTGACCCTCTGGT[CG]GGGCTGGCTCGGGCCGGGAGCCGGGACAGTGGCTCGAAGACCACTTTCTGCTGCGGCAGG CCGTGGCGGCCGTGCCGAACACTAGCACCTGGGGGATTCTCTGGATCCTGACCCTCTGGT[CG]GGGCTGGCTCGGGCCGGGAGCCGGGACAGTGGCTCGAAGACCACTTTCTGCTGCGGCAGG TGCCGAACACTAGCACCTGGGGGATTCTCTGGATCCTGACCCTCTGGTCG II 14089630 14089631 chr19 RFX1 Intron 13978818 13978819 chr19 RFX1 Intron 84084835 84084836 8 Rfx1 Intron NA NA NA NA NA 46136980 46136981 7 RFX1 Exon 65193103 65193104 2 RFX1 Exon 9935143 9935144 A2 RFX1 Exon NA NA NA NA NA 94109 94110 GeneScaffold_3209 RFX1 Intron NA NA NA NA NA 11712260 11712261 7 RFX1 Intron cg00010445
cg00010903 37421663 chr17 F TTTGATTAAACCCAGTAAACACATAAAGTTTTCAAAGTTAAACTCACCAATACTTGAAGT[CG]AGGACAGTGTATAGAAAGTTGGATTAATGTGCTATCTGTTATCTGAAAGAAATAACGTAT TTTGATTAAACCCAGTAAACACATAAAGTTTTCAAAGTTAAACTCACCAATACTTGAAGT[CG]AGGACAGTGTATAGAAAGTTGGATTAATGTGCTATCTGTTATCTGAAAGAAATAACGTAT TTTGATTAAACCCAGTAAACACATAAAGTTTTCAAAGTTAAACTCACCAATACTTGAAGT[CG]AGGACAGTGTATAGAAAGTTGGATTAATGTGCTATCTGTTATCTGAAAGAAATAACGTAT CGAGGACAGTGTATAGAAAGTTGGATTAATGTGCTATCTGTTATCTGAAA II 37421663 37421664 chr17 FBXL20 Exon 39265410 39265411 chr17 FBXL20 Exon NA NA NA NA NA 86045955 86045956 10 Fbxl20 Exon 23091390 23091391 11 FBXL20 Exon 22962500 22962501 12 FBXL20 Exon 40459168 40459169 E1 FBXL20 Exon 23118173 23118174 9 FBXL20 Exon 40612 40613 GeneScaffold_738 FBXL20 Exon 21494317 21494318 scaffold_31 FBXL20 Exon 39746795 39746796 19 FBXL20 Exon cg00010903
cg00010926 110388123 chrX F GCCATTTTTGTCCCAAATACTTCAGAACTCCCCTTTCCAGACCTCTAGACCTGTGACGGT[CG]CTTCAAGTCAATCAGAGGGAAAAATGGTATGAGTGATATAAATTATCATTTCTTATGATA GCCATTTTTGTCCCAAATACTTCAGAACTCCCCTTTCCAGACCTCTAGACCTGTGACGGT[CG]CTTCAAGTCAATCAGAGGGAAAAATGGTATGAGTGATATAAATTATCATTTCTTATGATA GCCATTTTTGTCCCAAATACTTCAGAACTCCCCTTTCCAGACCTCTAGACCTGTGACGGT[CG]CTTCAAGTCAATCAGAGGGAAAAATGGTATGAGTGATATAAATTATCATTTCTTATGATA CGCTTCAAGTCAATCAGAGGGAAAAATGGTATGAGTGATATAAATTATCA II 110388123 110388124 chrX PAK3 Exon 111144895 111144896 chrX PAK3 Exon 143712313 143712314 X Pak3 Exon 114974744 114974745 X Pak3 Intron 91951485 91951486 X PAK3 Exon 91169692 91169693 X PAK3 Exon 93233046 93233047 X PAK3 Exon 84261292 84261293 X PAK3 Exon 511899 511900 GeneScaffold_555 PAK3 Exon 20281949 20281950 scaffold_32 PAK3 Intron 59320935 59320936 X PAK3 Exon cg00010926
cg00010977 164301322 chr2 R TTTGCAGCCAAAAGCTTTTTTTCTCTTGAAATGTTAATAACTTTCTATTAGTTAATGTAG[CG]TGACTAAAATTCAGATTAGATATAATTCATTTTAATATCTGTGACTGGCTATCCTGATCA TGATCAGGATAGCCAGTCACAGATATTAAAATGAATTATATCTAATCTGAATTTTAGTCA[CG]CTACATTAACTAATAGAAAGTTATTAACATTTCAAGAGAAAAAAAGCTTTTGGCTGCAAA TGATCAGGATAGCCAGTCACAGATATTAAAATGAATTATATCTAATCTGAATTTTAGTCA[CG]CTACATTAACTAATAGAAAGTTATTAACATTTCAAGAGAAAAAAAGCTTTTGGCTGCAAA CCAGTCACAGATATTAAAATGAATTATATCTAATCTGAATTTTAGTCACG II 164301322 164301323 chr2 FIGN Intergenic_downstream 163444812 163444813 chr2 FIGN Intergenic_downstream 63820144 63820145 2 Fign Intergenic_downstream 49826222 49826223 3 Fign Intergenic_downstream 43767453 43767454 18 FIGN Intron 70111981 70111982 15 FIGN Intergenic_downstream 155203907 155203908 C1 FIGN Intergenic_downstream 8778111 8778112 36 FIGN Intergenic_downstream 199920 199921 scaffold_102743 FIGN Intergenic_downstream 64165311 64165312 scaffold_3 FIGN Intergenic_downstream 32915411 32915412 2 FIGN Intergenic_downstream cg00010977
cg00012521 30540210 chr7 R CCAAGGCAAAACAAGTCAAACTTGGCATGGAGGGATAGCCACCATTTTTCAGAGTCCTGG[CG]ATGAAGTGTGGGGAGTAGTATGGAAAATGAACAAAAGCAATTTAAATTCTCTGGATGAGT ACTCATCCAGAGAATTTAAATTGCTTTTGTTCATTTTCCATACTACTCCCCACACTTCAT[CG]CCAGGACTCTGAAAAATGGTGGCTATCCCTCCATGCCAAGTTTGACTTGTTTTGCCTTGG ACTCATCCAGAGAATTTAAATTGCTTTTGTTCATTTTCCATACTACTCCCCACACTTCAT[CG]CCAGGACTCTGAAAAATGGTGGCTATCCCTCCATGCCAAGTTTGACTTGTTTTGCCTTGG AATTTAAATTGCTTTTGTTCATTTTCCATACTACTCCCCACACTTCATCG II 30540210 30540211 chr7 GGCT Exon 30500594 30500595 chr7 GGCT fiveUTR 54989470 54989471 6 Ggct Exon 85189433 85189434 4 Ggct Exon 61222667 61222668 4 NOD1 Exon 42415044 42415045 18 NOD1 Exon 123618569 123618570 A2 NOD1 Exon NA NA NA NA NA 259170 259171 GeneScaffold_2975 GGCT Exon NA NA NA NA NA 65813303 65813304 4 GGCT Exon cg00012521
cg00012879 13189496 chr19 F CTCTAAAGAAGTCAGGAAAGCTGGACTTCTGCAGTGCCCTCTCCTCTCAGGGCAGCTCCC[CG]CGCATGGCTTTCACCCACCACCCGCTGCCTGTGCTTGCTGGAGTCAGACCAGGTGAGAAA CTCTAAAGAAGTCAGGAAAGCTGGACTTCTGCAGTGCCCTCTCCTCTCAGGGCAGCTCCC[CG]CGCATGGCTTTCACCCACCACCCGCTGCCTGTGCTTGCTGGAGTCAGACCAGGTGAGAAA TTTCTCACCTGGTCTGACTCCAGCAAGCACAGGCAGCGGGTGGTGGGTGAAAGCCATGCG[CG]GGGAGCTGCCCTGAGAGGAGAGGGCACTGCAGAAGTCCAGCTTTCCTGACTTCTTTAGAG TCTGACTCCAGCAAGCACAGGCAGCGGGTGGTGGGTGAAAGCCATGCGCG II 13189496 13189497 chr19 NFIX Exon 13078682 13078683 chr19 NFIX threeUTR NA NA NA NA NA NA NA NA NA NA 46676488 46676489 7 NFIX Exon 65975121 65975122 2 NFIX Exon 9330417 9330418 A2 NFIX Exon 49133732 49133733 20 NFIX Exon 108962 108963 GeneScaffold_2951 NFIX Exon 30062477 30062478 scaffold_26 TRMT1 Exon 12496634 12496635 7 NFIX Exon cg00012879
cg00013189 101296898 chr10 R TCTTTCCGCACCTTCCCGGCCCGGAGCCGCCTTTCAGCGAGGCCCGGCCCCACAATGGCG[CG]GCGCTCTGAGGCCTCCCCATTCACCCGCCTTGGCACGCTCACAATCGGCCGTGTGGCAGC GCTGCCACACGGCCGATTGTGAGCGTGCCAAGGCGGGTGAATGGGGAGGCCTCAGAGCGC[CG]CGCCATTGTGGGGCCGGGCCTCGCTGAAAGGCGGCTCCGGGCCGGGAAGGTGCGGAAAGA TCTTTCCGCACCTTCCCGGCCCGGAGCCGCCTTTCAGCGAGGCCCGGCCCCACAATGGCG[CG]GCGCTCTGAGGCCTCCCCATTCACCCGCCTTGGCACGCTCACAATCGGCCGTGTGGCAGC CGGCGCTCTGAGGCCTCCCCATTCACCCGCCTTGGCACGCTCACAATCGG I 101296898 101296899 chr10 NKX2-3 Intergenic_downstream 99537141 99537142 chr10 NKX2-3 Intergenic_downstream 43616541 43616542 19 Nkx2-3 Intergenic_downstream 263371259 263371260 1 Nkx2-3 Intergenic_downstream 30287655 30287656 1 NKX2-3 Intergenic_downstream 110724603 110724604 14 NKX2-3 Intergenic_downstream 60442419 60442420 D2 NKX2-3 Intergenic_downstream 12470310 12470311 28 NKX2-3 Intergenic_downstream 198164 198165 GeneScaffold_1035 NKX2-3 Intergenic_downstream 18699148 18699149 scaffold_10 NKX2-3 Intergenic_downstream 20534974 20534975 26 NKX2-3 Intergenic_downstream cg00013189

Total number of rows: 37554

Table truncated, full table size 31226 Kbytes.




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