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Series GSE190662 Query DataSets for GSE190662
Status Public on Aug 05, 2023
Title Methylation studies in strepsirrhini primates
Platform organisms Homo sapiens; Mus musculus; Rattus norvegicus
Sample organisms Lemur catta; Cheirogaleus medius; Otolemur crassicaudatus; Loris tardigradus; Nycticebus coucang; Perodicticus potto; Eulemur coronatus; Eulemur fulvus; Hapalemur griseus; Propithecus tattersalli; Eulemur macaco; Microcebus murinus; Galago moholi; Daubentonia madagascariensis; Eulemur mongoz; Eulemur rubriventer; Eulemur fulvus collaris; Propithecus diadema; Eulemur flavifrons; Xanthonycticebus pygmaeus; Eulemur sanfordi; Mirza zaza; Propithecus coquereli; Varecia rubra; Eulemur rufus; Eulemur albifrons
Experiment type Methylation profiling by array
Summary DNA methylation data from several primate species profiled on the mammalian methylation array (HorvathMammalMethylChip40) which focuses on highly conserved CpGs across mammalian species. We selected a total of 91 samples from animals representing 26 strepsirrhine species, in most cases, the entire lifespan, from immature (infant or juvenile) to senile stages: 68 samples from peripheral blood, 23 samples from skin
Blood and skin samples from many different primates. We profiled the following species: Cheirogaleus medius (Fat-tailed dwarf lemur), Daubentonia madagascariensis (Aye-aye), Eulemur albifrons (White-headed lemur), Eulemur collaris (Collared brown lemur), Eulemur coronatus (Crowned lemur), Eulemur flavifrons (Blue-eyed black lemur), Eulemur fulvus (Brown lemur), Eulemur macaco (Black lemur), Eulemur mongoz (Mongoose lemur), Eulemur rubriventer (Red-bellied lemur), Eulemur rufus (Red-fronted lemur), Eulemur sanfordi (Sanford's brown lemur), Galago moholi (South African galago), Hapalemur griseus (Bamboo lemur), Lemur catta (Ring-tailed lemur), Loris tardigradus (Slender loris), Microcebus murinus (Gray mouse lemur), Mirza zaza (Northern giant mouse lemur), Nycticebus coucang (Slow loris), Otolemur crassicaudatus (Greater galago), Perodicticus potto (Potto), Propithecus diadema (Diademed sifaka), Propithecus tattersalli (Golden-crowned sifaka), Varecia rubra (Red ruffed lemur). Peripheral blood was collected through venipuncture with standard procedures, either during a routine veterinary procedure or at time of necropsy. Skin tissues were collected during necropsies.
 
Overall design n=91 samples/arrays. Genome annotations of the array can be downloaded from https://github.com/shorvath/MammalianMethylationConsortium
 
Contributor(s) Horvath S, Ehmke EE
Citation(s) 37493860, 37563227, 38848365
Submission date Dec 10, 2021
Last update date Jun 26, 2024
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platforms (1)
GPL28271 Illumina HorvathMammalianMethylChip40 BeadChip
Samples (91)
GSM5727938 Sample1.Fat-tailed dwarf lemur.205600840020_R01C01
GSM5727939 Sample3.Fat-tailed dwarf lemur.205600840020_R03C01
GSM5727940 Sample4.Aye-aye.205600840020_R04C01
Relations
BioProject PRJNA787930

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE190662_Explanation_of_characteristic_variables.docx.gz 12.5 Kb (ftp)(http) DOCX
GSE190662_RAW.tar 68.3 Mb (http)(custom) TAR (of IDAT)
GSE190662_README.docx 12.9 Kb (ftp)(http) DOCX
GSE190662_datBetaNormalized.csv.gz 26.8 Mb (ftp)(http) CSV
Processed data are available on Series record
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