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Series GSE190664 Query DataSets for GSE190664
Status Public on Aug 05, 2023
Title Methylation studies in rhesus macaque
Platform organisms Homo sapiens; Mus musculus; Rattus norvegicus
Sample organism Macaca mulatta
Experiment type Methylation profiling by array
Summary DNA methylation data from rhesus macaque (Macaca mulatta) profiled on the mammalian methylation array (HorvathMammalMethylChip40) which focuses on highly conserved CpGs across mammalian species.
We profiled n = 283 tissue samples (blood, skin, adipose, kidney, liver, lung, muscle, and cerebral cortex)
 
Overall design n=283 samples/arrays. Genome annotations of the array can be downloaded from https://github.com/shorvath/MammalianMethylationConsortium
 
Contributor(s) Horvath S, Mattison JA
Citation(s) 34487267, 37563227, 38848365
Submission date Dec 10, 2021
Last update date Jun 26, 2024
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platforms (1)
GPL28271 Illumina HorvathMammalianMethylChip40 BeadChip
Samples (283)
GSM5728125 Sample1.Rhesus macaque.203672360044_R01C01
GSM5728126 Sample2.Rhesus macaque.203672360044_R02C01
GSM5728127 Sample3.Rhesus macaque.203672360044_R03C01
Relations
BioProject PRJNA787939

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE190664_Explanation_of_characteristic_variables.docx.gz 12.5 Kb (ftp)(http) DOCX
GSE190664_RAW.tar 213.7 Mb (http)(custom) TAR (of IDAT)
GSE190664_README.docx 12.9 Kb (ftp)(http) DOCX
GSE190664_datBetaNormalized.csv.gz 82.0 Mb (ftp)(http) CSV
Processed data are available on Series record
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