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| Status |
Public on Dec 20, 2022 |
| Title |
Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation |
| Platform organisms |
Drosophila melanogaster; synthetic construct |
| Sample organism |
Drosophila melanogaster |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Other
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Web link |
https://www.sciencedirect.com/science/article/pii/S1534580723003477?via%3Dihub
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| Citation(s) |
37557175 |
| |
| Submission date |
Nov 27, 2022 |
| Last update date |
Oct 16, 2023 |
| Contact name |
Kaelan Joseph Brennan |
| E-mail(s) |
KBrennan@stowers.org
|
| Phone |
8125281836
|
| Organization name |
Stowers Institute for Medical Research
|
| Lab |
Zeitlinger
|
| Street address |
1000 East 50th Street
|
| City |
Kansas City |
| State/province |
MO |
| ZIP/Postal code |
64110 |
| Country |
USA |
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| Platforms (2) |
| GPL11260 |
Agilent custom ME and HK design array [8mer] |
| GPL19132 |
Illumina NextSeq 500 (Drosophila melanogaster) |
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| Samples (70)
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| GSM6757704 |
OreR, 1.5to2, atac, 1 |
| GSM6757705 |
OreR, 1.5to2, atac, 2 |
| GSM6757706 |
OreR, 1.5to2, atac, 3 |
| GSM6757707 |
OreR, 2to2.5, atac, 1 |
| GSM6757708 |
OreR, 2to2.5, atac, 2 |
| GSM6757709 |
OreR, 2to2.5, atac, 3 |
| GSM6757710 |
OreR, 2.5to3, atac, 1 |
| GSM6757711 |
OreR, 2.5to3, atac, 2 |
| GSM6757712 |
OreR, 2.5to3, atac, 3 |
| GSM6757713 |
gd7, 1to1.5, atac, 1 |
| GSM6757714 |
gd7, 1to1.5, atac, 2 |
| GSM6757715 |
gd7, 1to1.5, atac, 3 |
| GSM6757716 |
gd7, 1.5to2, atac, 1 |
| GSM6757717 |
gd7, 1.5to2, atac, 2 |
| GSM6757718 |
gd7, 1.5to2, atac, 3 |
| GSM6757719 |
gd7, 2to2.5, atac, 1 |
| GSM6757720 |
gd7, 2to2.5, atac, 2 |
| GSM6757721 |
gd7, 2to2.5, atac, 3 |
| GSM6757722 |
gd7, 2.5to3, atac, 1 |
| GSM6757723 |
gd7, 2.5to3, atac, 2 |
| GSM6757724 |
gd7, 2.5to3, atac, 3 |
| GSM6757725 |
zld-, 1to1.5, atac, 1 |
| GSM6757726 |
zld-, 1to1.5, atac, 2 |
| GSM6757727 |
zld-, 1to1.5, atac, 3 |
| GSM6757728 |
zld-, 1.5to2, atac, 1 |
| GSM6757729 |
zld-, 1.5to2, atac, 2 |
| GSM6757730 |
zld-, 1.5to2, atac, 3 |
| GSM6757731 |
zld-, 2to2.5, atac, 1 |
| GSM6757732 |
zld-, 2to2.5, atac, 2 |
| GSM6757733 |
zld-, 2to2.5, atac, 3 |
| GSM6757734 |
zld-, 2.5to3, atac, 1 |
| GSM6757735 |
zld-, 2.5to3, atac, 2 |
| GSM6757736 |
zld-, 2.5to3, atac, 3 |
| GSM6757737 |
cic6, 2to2.5, atac, 1 |
| GSM6757738 |
cic6, 2to2.5, atac, 2 |
| GSM6757739 |
cic6, 2to2.5, atac, 3 |
| GSM6757740 |
cic6, 2.5to3, atac, 1 |
| GSM6757741 |
cic6, 2.5to3, atac, 2 |
| GSM6757742 |
cic6, 2.5to3, atac, 3 |
| GSM6757743 |
OreR, Bcd, nexus, 1 |
| GSM6757744 |
OreR, Bcd, nexus, 2 |
| GSM6757745 |
OreR, Bcd, nexus, 3 |
| GSM6757746 |
OreR, Cad, nexus, 1 |
| GSM6757747 |
OreR, Cad, nexus, 2 |
| GSM6757748 |
OreR, Cad, nexus, 3 |
| GSM6757749 |
OreR, Dl, nexus, 1 |
| GSM6757750 |
OreR, Dl, nexus, 2 |
| GSM6757751 |
OreR, Dl, nexus, 3 |
| GSM6757752 |
OreR, GAF, nexus, 1 |
| GSM6757753 |
OreR, GAF, nexus, 2 |
| GSM6757754 |
OreR, GAF, nexus, 3 |
| GSM6757755 |
OreR, Twi, nexus, 1 |
| GSM6757756 |
OreR, Twi, nexus, 2 |
| GSM6757757 |
OreR, Twi, nexus, 3 |
| GSM6757758 |
OreR, Zld, nexus, 1 |
| GSM6757759 |
OreR, Zld, nexus, 2 |
| GSM6757760 |
OreR, Zld, nexus, 3 |
| GSM6757761 |
OreR, H3K4me1, seq, 1 |
| GSM6757762 |
OreR, H3K4me1, seq, 2 |
| GSM6757763 |
OreR, H3K27ac, seq, 1 |
| GSM6757764 |
OreR, H3K27ac, seq, 2 |
| GSM6757765 |
OreR, WCE, seq, 1 |
| GSM6757766 |
OreR, 2to3, mnase, 1 |
| GSM6757767 |
OreR, 2to3, mnase, 2 |
| GSM6757768 |
OreR, 2to3, mnase, 3 |
| GSM6757769 |
pEX0562.1_ME_8mer |
| GSM6757770 |
pEX0562.2_HK_8mer |
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| This SuperSeries is composed of the following SubSeries:
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| GSE218848 |
Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation [ATAC-seq] |
| GSE218849 |
Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation [ChIP-nexus] |
| GSE218850 |
Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation [Mnase-seq] |
| GSE218851 |
Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation [PBM] |
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| Relations |
| BioProject |
PRJNA905853 |
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