NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL11260 Query DataSets for GPL11260
Status Public on Dec 02, 2010
Title Agilent custom ME and HK design array [8mer]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism synthetic construct
Manufacturer Agilent Technologies
Manufacture protocol This protein binding microarray (PBM) involved binding GST-tagged proteins to custom-designed, double-stranded 44K Agilent microarrays in order to determine their sequence preferences. The method is described in Berger et al., Nature Biotechnology 2006.
 
Description 8mer sequence depicted below is not the sequence represented on the array, but the targeted sequence. Please see the two array design files attached below for array probe sequences.
 
Submission date Dec 01, 2010
Last update date Jun 10, 2014
Contact name Harm van Bakel
E-mail(s) harm.vanbakel@mssm.edu
Organization name Mount Sinai School of Medicine
Department Genetics and Genomic Sciences
Lab Bakel Lab
Street address One Gustave L. Levy Place, Box 1498
City New York
State/province New York
ZIP/Postal code 10029
Country USA
 
Samples (4241) GSM632125, GSM632126, GSM632127, GSM632128, GSM632129, GSM632130 
Series (28)
GSE25723 Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays
GSE30992 An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming
GSE31007 An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming [protein binding microarray]
Relations
Alternative to GPL11261

Data table header descriptions
ID 8mer
SEQUENCE 8mer sequence

Data table
ID SEQUENCE
AAAAAAAA AAAAAAAA
AAAAAAAC AAAAAAAC
AAAAAAAG AAAAAAAG
AAAAAAAT AAAAAAAT
AAAAAACA AAAAAACA
AAAAAACC AAAAAACC
AAAAAACG AAAAAACG
AAAAAACT AAAAAACT
AAAAAAGA AAAAAAGA
AAAAAAGC AAAAAAGC
AAAAAAGG AAAAAAGG
AAAAAAGT AAAAAAGT
AAAAAATA AAAAAATA
AAAAAATC AAAAAATC
AAAAAATG AAAAAATG
AAAAAATT AAAAAATT
AAAAACAA AAAAACAA
AAAAACAC AAAAACAC
AAAAACAG AAAAACAG
AAAAACAT AAAAACAT

Total number of rows: 32896

Table truncated, full table size 578 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL11260_HK_design.txt.gz 878.3 Kb (ftp)(http) TXT
GPL11260_ME_design.txt.gz 802.7 Kb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap