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Series GSE6043 Query DataSets for GSE6043
Status Public on Oct 16, 2007
Title Translation initiation factor 4E confers primary human cells with neoplastic properties
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Deregulation of translational control is an obligatory step in oncogenesis; however, this step has not been addressed by prior genomic and transcriptional profiling studies of cancer biology. Here we simulate the translational deregulation found in cancer by ectopically over expressing translation initiation factor eIF4E in primary human mammary epithelial cells; and examine its impact on cell biology and the pattern of ribosomal recruitment to mRNA genome wide. Over expression of eIF4E allows cells to bypass M0 premature growth arrest, but does not confer other malignant properties. However, in concert with hTERT, eIF4E imparts cells with growth and survival autonomy - and profoundly alters the pattern of polyribosome-associated mRNA encoding cell cycle and apoptosis regulators. The translational response to increased eIF4E is not only a unidirectional activation of oncogenic drivers, but also consists of complex intrinsic translational mechanisms that mitigate the acquisition of neoplastic properties.
Keywords: Cell line comparison using both total and polyribosomal RNA
 
Overall design A comparison of HMEC/hTERT and HMEC/hTERT/eIF4E cells using both total and polyribosoaml associated RNA.
 
Contributor(s) Larsson O
Citation(s) 17638893
Submission date Oct 16, 2006
Last update date Mar 16, 2012
Contact name Ola Larsson
E-mail(s) ola.larsson@ki.se
Phone +46 (0)8 517 73280
Organization name Karolinska Institutet
Department Department of oncology-pathology
Street address CCK, R8:01
City Stockholm
ZIP/Postal code 171 76
Country Sweden
 
Platforms (1)
GPL4454 Affymetrix GeneChip Human Genome U133 Plus 2.0 Array based on a custom CDF
Samples (9)
GSM140193 HMEC/hTERT/polysomal RNA 1
GSM140199 HMEC/hTERT/eIF4E/polysomal RNA 1
GSM140202 HMEC/hTERT/eIF4E/Polysomal RNA 2
Relations
BioProject PRJNA97777

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE6043_RAW.tar 71.1 Mb (http)(custom) TAR (of CEL)

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