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Status |
Public on Mar 12, 2016 |
Title |
Sequence-Targeted Nucleosome Sliding in vivo - Transcription Profiling |
Organism |
Saccharomyces cerevisiae |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
RNA sequencing was performed on various W303 variants to determine effects of nucleosome repositioning on transcript abundance
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Overall design |
RNA sequencing was carried out in multiple backgrounds to determine effects of nucleosome repositioning in various contexts. For engineered chromatin remodeling factors, a catalytically inactive control was included.
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Contributor(s) |
McKnight JN, Tsukiyama T, Bowman GD |
Citation(s) |
26993344 |
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Submission date |
Sep 01, 2015 |
Last update date |
May 15, 2019 |
Contact name |
Jeffrey N McKnight |
E-mail(s) |
jmcknig2@uoregon.edu
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Organization name |
University of Oregon
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Department |
Institute of Molecular Biology
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Lab |
McKnight Lab
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Street address |
1229 University of Oregon, 1318 Franklin Blvd, Rm 273 Onyx Bridge
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City |
Eugene |
State/province |
OR |
ZIP/Postal code |
97408 |
Country |
USA |
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Platforms (1) |
GPL9134 |
Illumina Genome Analyzer (Saccharomyces cerevisiae) |
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Samples (17)
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This SubSeries is part of SuperSeries: |
GSE72572 |
Sequence-Targeted Nucleosome Sliding in vivo |
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Relations |
BioProject |
PRJNA294375 |
SRA |
SRP063047 |