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GEO accession:
Series GSE85182
Query DataSets for GSE85182
Status
Public on Mar 30, 2017
Title
Genome-wide analyses reveal widespread roles for Spt5 in sense and antisense transcription
Organism
Schizosaccharomyces pombe
Experiment type
Other
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
28366642
Submission date
Aug 04, 2016
Last update date
May 15, 2019
Contact name
Peter J Park
E-mail(s)
peter_park@harvard.edu
Phone
617-432-7373
Organization name
Harvard Medical School
Department
Center for Biomedical Informatics
Street address
10 Shattuck St
City
Boston
State/province
MA
ZIP/Postal code
02115
Country
USA
Platforms (3)
GPL13988
Illumina HiSeq 2000 (Schizosaccharomyces pombe)
GPL17225
Illumina HiSeq 2500 (Schizosaccharomyces pombe)
GPL20584
Illumina NextSeq 500 (Schizosaccharomyces pombe)
Samples (70)
Less...
More...
GSM2258030
NETseq_Spt5_T0_I
GSM2258031
NETseq_Spt5_T0_II
GSM2258032
NETseq_Spt5_T4.5_I
GSM2258033
NETseq_Spt5_T4.5_II
GSM2258034
RNAseq_Spt5-dCTR_I
GSM2258035
RNAseq_Spt5-dCTR_II
GSM2258036
RNAseq_Spt5-WT_II
GSM2258037
RNAseq_Spt5-WT_I
GSM2258038
RNAseq_Spt5-T0_II
GSM2258039
RNAseq_Spt5-T0_I
GSM2258040
RNAseq_Spt5-T0-untagged_II
GSM2258041
RNAseq_Spt5-T0-untagged_I
GSM2258042
RNAseq_Spt5-T4.5_II
GSM2258043
RNAseq_Spt5-T4.5_I
GSM2258044
RNAseq_Spt5-T4.5-untagged_II
GSM2258045
RNAseq_Spt5-T4.5-untagged_I
GSM2258061
ChIPseq_Spt5-T0_I_chip
GSM2258062
ChIPseq_Spt5-T4.5_I_chip
GSM2258063
ChIPseq_Spt5-T0_II_chip
GSM2258064
ChIPseq_Spt5-T4.5_II_chip
GSM2258065
ChIPseq_Spt5-WT_I_chip
GSM2258066
ChIPseq_Spt5-WT_II_chip
GSM2258067
ChIPseq_Spt5-dCTR_I_chip
GSM2258068
ChIPseq_Spt5-dCTR_II_chip
GSM2258069
ChIPseq_Spt5-T0_I_input
GSM2258070
ChIPseq_Spt5-T4.5_I_input
GSM2258071
ChIPseq_Spt5-T0_II_input
GSM2258072
ChIPseq_Spt5-T4.5_II_input
GSM2258073
ChIPseq_Spt5-WT_I_input
GSM2258074
ChIPseq_Spt5-WT_II_input
GSM2258075
ChIPseq_Spt5-dCTR_I_input
GSM2258076
ChIPseq_Spt5-dCTR_II_input
GSM2259775
4tU-seq 0h Rep1
GSM2259776
4tU-seq 0h Rep2
GSM2259777
4tU-seq 2.5h Rep1
GSM2259778
4tU-seq 2.5h Rep2
GSM2259779
4tU-seq 4.5h Rep1
GSM2259780
4tU-seq 4.5h Rep2
GSM2462679
ChIP-seq_Spt5-deg_DMSO_S2P_r1
GSM2462680
ChIP-seq_Spt5-deg_DMSO_S5P_r1
GSM2462681
ChIP-seq_Spt5-deg_DMSO_Pol2_r1
GSM2462682
ChIP-seq_Spt5-deg_DMSO_Spt5_r1
GSM2462683
ChIP-seq_Spt5-deg_NAA+T_S2P_r1
GSM2462684
ChIP-seq_Spt5-deg_NAA+T_S5P_r1
GSM2462685
ChIP-seq_Spt5-deg_NAA+T_Pol2_r1
GSM2462686
ChIP-seq_Spt5-deg_NAA+T_Spt5_r1
GSM2462687
ChIP-seq_noTag_noTreat_S2P_r1
GSM2462688
ChIP-seq_noTag_noTreat_S5P_r1
GSM2462689
ChIP-seq_noTag_noTreat_Pol2_r1
GSM2462690
ChIP-seq_Spt5-V5-IAA17_noTreat_Spt5_r1
GSM2462691
ChIP-seq_Spt5-deg_DMSO_S2P_r2
GSM2462692
ChIP-seq_Spt5-deg_DMSO_S5P_r2
GSM2462693
ChIP-seq_Spt5-deg_DMSO_Pol2_r2
GSM2462694
ChIP-seq_Spt5-deg_DMSO_Spt5_r2
GSM2462695
ChIP-seq_Spt5-deg_NAA+T_S2P_r2
GSM2462696
ChIP-seq_Spt5-deg_NAA+T_S5P_r2
GSM2462697
ChIP-seq_Spt5-deg_NAA+T_Pol2_r2
GSM2462698
ChIP-seq_Spt5-deg_NAA+T_Spt5_r2
GSM2462699
ChIP-seq_noTag_noTreat_S2P_r2
GSM2462700
ChIP-seq_noTag_noTreat_S5P_r2
GSM2462701
ChIP-seq_noTag_noTreat_Pol2_r2
GSM2462702
ChIP-seq_Spt5-V5-IAA17_noTreat_Spt5_r2
GSM2462703
ChIP-seq_Spt5-deg_DMSO_INPUT_r1
GSM2462704
ChIP-seq_Spt5-deg_NAA+T_INPUT_r1
GSM2462705
ChIP-seq_noTag_noTreat_INPUT_r1
GSM2462706
ChIP-seq_Spt5-V5-IAA17_noTreat_INPUT_r1
GSM2462707
ChIP-seq_Spt5-deg_DMSO_INPUT_r2
GSM2462708
ChIP-seq_Spt5-deg_NAA+T_INPUT_r2
GSM2462709
ChIP-seq_noTag_noTreat_INPUT_r2
GSM2462710
ChIP-seq_Spt5-V5-IAA17_noTreat_INPUT_r2
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE85124
Genome-wide analyses reveal widespread roles for Spt5 in sense and antisense transcription [NET-seq]
GSE85125
Genome-wide analyses reveal widespread roles for Spt5 in sense and antisense transcription [RNA-seq]
GSE85127
Genome-wide analyses reveal widespread roles for Spt5 in sense and antisense transcription [ChIP-seq_round1]
GSE85181
Genome-wide analyses reveal widespread roles for Spt5 in sense and antisense transcription [4tU-seq]
GSE93803
Genome-wide analyses reveal widespread roles for Spt5 in sense and antisense transcription [ChIP-seq_round2]
Relations
BioProject
PRJNA336474
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE85182_RAW.tar
1.0 Gb
(http)
(custom)
TAR (of BEDGRAPH, BIGWIG, TXT, WIG)
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