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GEO accession:
Series GSE86095
Query DataSets for GSE86095
Status
Public on Aug 22, 2017
Title
VHL deficiency drives enhancer activation of oncogenes in clear cell renal cell carcinoma
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
28893800
Submission date
Aug 26, 2016
Last update date
Jul 25, 2021
Contact name
Xiaosai Yao
E-mail(s)
xiaosai.yao@gmail.com, yao.xiaosai@gene.com
Phone
+65 68088271
Organization name
Genome Institute of Singapore
Street address
60 Biopolis Street, Genome, #02-01
City
Singapore
ZIP/Postal code
138672
Country
Singapore
Platforms (2)
GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
Samples (195)
Less...
More...
GSM2293310
86049102 H3K4me3 ChIP-seq
GSM2293311
86049102 Input rep1
GSM2293312
86049102 H3K4me1 ChIP-seq
GSM2293313
86049102 Input rep2
GSM2293314
86049102 H3K27ac ChIP-seq
GSM2293315
40911432 H3K4me3 ChIP-seq
GSM2293316
40911432 H3K4me1 ChIP-seq
GSM2293317
40911432 Input rep1
GSM2293318
40911432 Input rep2
GSM2293319
40911432 H3K27ac ChIP-seq
GSM2293320
12364284 H3K4me3 ChIP-seq
GSM2293321
12364284 H3K4me1 ChIP-seq
GSM2293322
12364284 H3K27ac ChIP-seq
GSM2293323
12364284 Input
GSM2293324
20431713 H3K4me3 ChIP-seq
GSM2293325
20431713 H3K4me1 ChIP-seq
GSM2293326
20431713 H3K27ac ChIP-seq
GSM2293327
20431713 Input
GSM2293328
74575859 H3K4me3 ChIP-seq
GSM2293329
74575859 H3K4me1 ChIP-seq
GSM2293330
74575859 H3K27ac ChIP-seq
GSM2293331
74575859 Input
GSM2293332
786-O H3K4me3 ChIP-seq
GSM2293333
786-O Input rep1
GSM2293334
786-O H3K4me1 ChIP-seq
GSM2293335
786-O Input rep2
GSM2293336
786-O H3K27ac ChIP-seq
GSM2293337
A-498 H3K4me3 ChIP-seq
GSM2293338
A-498 H3K27ac ChIP-seq
GSM2293339
A-498 H3K4me1 ChIP-seq
GSM2293340
A-498 Input
GSM2293341
HK-2 H3K4me3 ChIP-seq
GSM2293342
HK-2 H3K27ac ChIP-seq
GSM2293343
HK-2 H3K4me1 ChIP-seq
GSM2293344
HK-2 Input
GSM2293345
PCS-400 H3K4me3 ChIP-seq
GSM2293346
PCS-400 H3K4me1 ChIP-seq
GSM2293347
PCS-400 H3K27ac ChIP-seq
GSM2293348
PCS-400 Input
GSM2293404
20431713N Input
GSM2293405
20431713N H3K27ac ChIP-seq
GSM2293406
20431713N H3K4me1 ChIP-seq
GSM2293407
20431713N H3K4me3 ChIP-seq
GSM2293408
20431713T Input
GSM2293409
20431713T H3K27ac ChIP-seq
GSM2293410
20431713T H3K4me1 ChIP-seq
GSM2293411
20431713T H3K4me3 ChIP-seq
GSM2293412
74575859N Input
GSM2293413
74575859N H3K27ac ChIP-seq
GSM2293414
74575859N H3K4me1 ChIP-seq
GSM2293415
74575859N H3K4me3 ChIP-seq
GSM2293416
74575859T Input
GSM2293417
74575859T H3K27ac ChIP-seq
GSM2293418
74575859T H3K4me1 ChIP-seq
GSM2293419
74575859T H3K4me3 ChIP-seq
GSM2293420
12364284N Input
GSM2293421
12364284N H3K27ac ChIP-seq
GSM2293422
12364284N H3K4me1 ChIP-seq
GSM2293423
12364284N H3K4me3 ChIP-seq
GSM2293424
12364284T Input
GSM2293425
12364284T H3K27ac ChIP-seq
GSM2293426
12364284T H3K4me1 ChIP-seq
GSM2293427
12364284T H3K4me3 ChIP-seq
GSM2293428
40911432T H3K4me3 ChIP-seq
GSM2293429
40911432T H3K4me1 ChIP-seq
GSM2293430
40911432T H3K27ac ChIP-seq
GSM2293431
40911432T Input
GSM2293432
40911432N H3K4me3 ChIP-seq
GSM2293433
40911432N H3K4me1 ChIP-seq
GSM2293434
40911432N H3K27ac ChIP-seq
GSM2293435
40911432N Input
GSM2293436
86049102T H3K4me3 ChIP-seq
GSM2293437
86049102T H3K4me1 ChIP-seq
GSM2293438
86049102T H3K27ac ChIP-seq
GSM2293439
86049102T Input
GSM2293440
86049102N H3K4me3 ChIP-seq
GSM2293441
86049102N H3K4me1 ChIP-seq
GSM2293442
86049102N H3K27ac ChIP-seq
GSM2293443
86049102N Input
GSM2293444
75416923T H3K4me3 ChIP-seq
GSM2293445
75416923T H3K4me1 ChIP-seq
GSM2293446
75416923T H3K27ac ChIP-seq
GSM2293447
75416923T input
GSM2293448
75416923N H3K4me3 ChIP-seq
GSM2293449
75416923N H3K4me1 ChIP-seq
GSM2293450
75416923N H3K27ac ChIP-seq
GSM2293451
75416923N input
GSM2293452
70528835T H3K4me3 ChIP-seq
GSM2293453
70528835T H3K4me1 ChIP-seq
GSM2293454
70528835T H3K27ac ChIP-seq
GSM2293455
70528835T input
GSM2293456
70528835N H3K4me3 ChIP-seq
GSM2293457
70528835N H3K4me1 ChIP-seq
GSM2293458
70528835N H3K27ac ChIP-seq
GSM2293459
70528835N input
GSM2293460
17621953T H3K4me3 ChIP-seq
GSM2293461
17621953T H3K4me1 ChIP-seq
GSM2293462
17621953T H3K27ac ChIP-seq
GSM2293463
17621953T input
GSM2293464
17621953N H3K4me3 ChIP-seq
GSM2293465
17621953N H3K4me1 ChIP-seq
GSM2293466
17621953N H3K27ac ChIP-seq
GSM2293467
17621953N input
GSM2293468
77972083T H3K27ac ChIP-seq
GSM2293469
77972083T Input
GSM2293470
77972083N H3K27ac ChIP-seq
GSM2293471
77972083N Input
GSM2293472
57398667T H3K27ac ChIP-seq
GSM2293473
57398667T Input
GSM2293474
57398667N H3K27ac ChIP-seq
GSM2293475
57398667N Input
GSM2293476
786-O ETS1 ChIP-seq
GSM2293477
786-O NFkb ChIP-seq
GSM2293478
786-O P300 ChIP-seq
GSM2293479
786-O C-Jun ChIP-seq
GSM2293480
786-O Input
GSM2723818
786-O empty vector H3K27ac ChIP-seq rep1
GSM2723819
786-O empty vector H3K4me1 ChIP-seq rep1
GSM2723820
786-O empty vector H3K27me3 ChIP-seq rep1
GSM2723821
786-O empty vector input rep1
GSM2723822
786-O wt VHL H3K27ac ChIP-seq rep1
GSM2723823
786-O wt VHL H3K4me1 ChIP-seq rep1
GSM2723824
786-O wt VHL H3K27me3 ChIP-seq rep1
GSM2723825
786-O wt VHL input rep1
GSM2723826
786-O empty vector H3K27ac ChIP-seq rep2
GSM2723827
786-O empty vector H3K4me1 ChIP-seq rep2
GSM2723828
786-O empty vector H3K27me3 ChIP-seq rep2
GSM2723829
786-O empty vector input rep2
GSM2723830
786-O wt VHL H3K27ac ChIP-seq rep2
GSM2723831
786-O wt VHL H3K4me1 ChIP-seq rep2
GSM2723832
786-O wt VHL H3K27me3 ChIP-seq rep2
GSM2723833
786-O wt VHL input rep2
GSM2723834
A-498 empty vector H3K27ac ChIP-seq rep1
GSM2723835
A-498 empty vector input rep1
GSM2723836
A-498 wt VHL H3K27ac ChIP-seq rep1
GSM2723837
A-498 wt VHL input rep1
GSM2723838
A-498 empty vector H3K27ac ChIP-seq rep2
GSM2723839
A-498 empty vector input rep2
GSM2723840
A-498 wt VHL H3K27ac ChIP-seq rep2
GSM2723841
A-498 wt VHL input rep2
GSM2723842
12364284 empty vector H3K27ac ChIP-seq rep1
GSM2723843
12364284 empty vector H3K4me1 ChIP-seq rep1
GSM2723844
12364284 empty vector H3K27me3 ChIP-seq rep1
GSM2723845
12364284 empty vector input rep1
GSM2723846
12364284 wt VHL H3K27ac ChIP-seq rep1
GSM2723847
12364284 wt VHL H3K4me1 ChIP-seq rep1
GSM2723848
12364284 wt VHL H3K27me3 ChIP-seq rep1
GSM2723849
12364284 wt VHL input rep1
GSM2723850
12364284 empty vector H3K27ac ChIP-seq rep2
GSM2723851
12364284 empty vector H3K4me1 ChIP-seq rep2
GSM2723852
12364284 empty vector H3K27me3 ChIP-seq rep2
GSM2723853
12364284 empty vector input rep2
GSM2723854
12364284 wt VHL H3K27ac ChIP-seq rep2
GSM2723855
12364284 wt VHL H3K4me1 ChIP-seq rep2
GSM2723856
12364284 wt VHL H3K27me3 ChIP-seq rep2
GSM2723857
12364284 wt VHL input rep2
GSM2723858
40911432 empty vector H3K27ac ChIP-seq rep1
GSM2723859
40911432 empty vector input rep1
GSM2723860
40911432 wt VHL H3K27ac ChIP-seq rep1
GSM2723861
40911432 wt VHL input rep1
GSM2723862
40911432 empty vector H3K27ac ChIP-seq rep2
GSM2723863
40911432 empty vector input rep2
GSM2723864
40911432 wt VHL H3K27ac ChIP-seq rep2
GSM2723865
40911432 wt VHL input rep2
GSM2723866
786-O non-targeting control H3K27ac ChIP-seq
GSM2723867
786-O non-targeting control input
GSM2723868
786-O HIF2A siRNA H3K27ac ChIP-seq
GSM2723869
786-O HIF2A siRNA control input
GSM2723874
786-O EV RNA-seq
GSM2723875
786-O VHL RNA-seq
GSM2723876
786-O NT RNA-seq
GSM2723877
786-O HIF2A siRNA RNA-seq
GSM2723878
40911432 HIF1A ChIP-seq
GSM2723879
40911432 HIF2A ChIP-seq
GSM2723880
40911432 input
GSM2723919
12364284N normal kidney RNA-Seq
GSM2723920
12364284T ccRCC RNA-Seq
GSM2723921
17621953N normal kidney RNA-Seq
GSM2723922
17621953T ccRCC RNA-Seq
GSM2723923
20431713N normal kidney RNA-seq
GSM2723924
20431713T ccRCC RNA-seq
GSM2723925
40911432N normal kidney RNA-seq
GSM2723926
40911432T ccRCC RNA-seq
GSM2723927
57398667N normal kidney RNA-seq
GSM2723928
57398667T ccRCC RNA-seq
GSM2723929
70528835N normal kidney RNA-seq
GSM2723930
70528835T ccRCC RNA-seq
GSM2723931
74575859N normal kidney RNA-seq
GSM2723932
74575859T ccRCC RNA-seq
GSM2723933
75416923N normal kidney RNA-seq
GSM2723934
75416923T ccRCC RNA-seq
GSM2723935
77972083N normal kidney RNA-seq
GSM2723936
77972083T ccRCC RNA-seq
GSM2723937
86049102N normal kidney RNA-seq
GSM2723938
86049102T ccRCC RNA-seq
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE86087
cis-regulatory landscape in ccRCC [cell lines]
GSE86091
cis-regulatory landscape in ccRCC [tissue]
GSE86092
Transcription factors enriched in tumor-associated enhancers in VHL-deficient ccRCC
GSE102095
VHL restoration alters cis-regulatory landscape
GSE102097
VHL/HIF2a axis alters transcriptomic profiles in ccRCC
GSE102101
Transcriptomics profiles of patient-matched normal kidney and ccRCC pairs
Relations
BioProject
PRJNA340245
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Download
File type/resource
GSE86095_RAW.tar
6.5 Gb
(http)
(custom)
TAR (of BED, BW)
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