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Sample GSM102257 Query DataSets for GSM102257
Status Public on Mar 28, 2007
Title 0936-2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics squamous cell cartinoma of oral tongue, male
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label biotin
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description Biopsy sample
Data processing CodeLink Expression Analysis version 4.1
 
Submission date Mar 29, 2006
Last update date Apr 27, 2006
Contact name Hiroshi Watanabe
E-mail(s) hiro.orad@tmd.ac.jp
Phone +81-43-206-4048
Organization name National institute of radiological sceiences
Street address Anagawa 4-9-1
City Inage-ku
State/province Chiba-shi
ZIP/Postal code 263+8555
Country Japan
 
Platform ID GPL2891
Series (1)
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.

Data table header descriptions
ID_REF CodeLink Feature_id
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
109 1 32.0510 0.5319 G 1.1476 125.0510 118.0000 31.2952 500 25.2313251495361 108.971846518357 92.8151 93.0000 10.6479 1059 0.5319
110 1 150.8164 2.5026 G 2.2430 243.8164 183.0000 151.7547 522 25.7804393768311 108.700148598518 93.1891 93.0000 10.4668 1107 2.5026
111 1 43.5123 0.7220 G 1.2646 135.5123 129.0000 37.3761 496 25.1301975250244 107.161015531924 92.2428 92.0000 10.1073 981 0.7220
112 1 220.6164 3.6609 G 2.8980 312.6164 229.0000 210.0896 521 25.7557334899902 107.87130751667 92.5301 92.0000 10.5809 1019 3.6609
113 1 348.8220 5.7883 G 4.0996 440.8220 390.0000 272.3051 538 26.1725597381592 107.529034167868 93.1804 92.0000 10.3527 1166 5.7883
114 1 33.1816 0.5506 G 1.1588 127.1816 116.0000 47.7370 443 23.7496337890625 109.752291408221 93.9916 94.0000 10.5015 995 0.5506
116 1 45.8264 0.7604 G 1.2766 138.8264 129.0000 42.2417 440 23.6690807342529 108.750963533282 93.5079 93.0000 10.5006 918 0.7604
117 1 39.7309 0.6593 G 1.2203 133.7309 128.0000 31.7232 439 23.6421699523926 109.586999011406 94.5720 94.0000 10.3913 996 0.6593
118 1 0.8606 L 0.8722 94.8606 93.0000 12.4547 212 16.4294490814209 108.762345168785 93.7493 94.0000 9.8416 760 0.0143
119 1 0.2950 L 0.8605 93.2950 92.0000 11.0567 328 20.4358158111572 108.424140894851 93.2294 93.0000 10.2828 962 0.0049
120 1 18.1285 0.3008 G 1.0257 111.1285 111.0000 15.4190 405 22.7081928253174 108.343143778115 92.9555 93.0000 10.2288 935 0.3008
121 1 2.2985 L 0.8755 96.2985 95.0000 12.2324 205 16.1559314727783 109.998205573615 94.2452 94.0000 10.6655 760 0.0381
123 1 13.6345 L 0.9834 108.6345 108.0000 15.1551 389 22.2551155090332 110.473049938914 95.2446 95.0000 10.3154 872 0.2262
124 1 51.7936 0.8595 G 1.3313 146.7936 137.0000 46.4726 379 21.9671974182129 110.260913728674 94.8397 95.0000 10.1739 791 0.8595
125 1 19.6194 0.3256 G 1.0381 114.6194 113.0000 20.8689 387 22.1978302001953 110.412394332815 94.8853 95.0000 10.2749 971 0.3256
126 1 3.1281 L 0.8833 100.1281 100.0000 13.7450 326 20.3734169006348 113.359016427183 96.9635 97.0000 10.9060 884 0.0519
127 1 7.7051 L 0.9349 101.7051 102.0000 12.1789 362 21.4688777923584 108.781479129984 94.6647 94.0000 9.8543 904 0.1279
128 1 149.9210 2.4878 G 2.2215 243.9210 190.0000 135.8039 451 23.9631175994873 109.800900469768 95.2495 94.0000 10.5339 996 2.4878
130 1 466.5653 7.7421 G 5.0174 563.5653 457.0000 339.8213 475 24.5924530029297 112.322686798573 96.9334 97.0000 10.2151 922 7.7421
131 1 81.9471 1.3598 G 1.5815 179.9471 166.0000 67.9776 499 25.2060813903809 113.779400792059 98.0891 98.0000 10.5196 1075 1.3598

Total number of rows: 20469

Table truncated, full table size 2613 Kbytes.




Supplementary data files not provided
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